Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FX095_RS09885 Genome accession   NZ_LR698992
Coordinates   2015645..2017075 (+) Length   476 a.a.
NCBI ID   WP_088860996.1    Uniprot ID   A0A248LKC3
Organism   Laribacter hongkongensis isolate MGYG-HGUT-02398     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2010645..2022075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX095_RS09860 - 2012271..2013254 (+) 984 WP_088861961.1 SIS domain-containing protein -
  FX095_RS09865 - 2013262..2013789 (+) 528 WP_088860995.1 HAD family hydrolase -
  FX095_RS09870 lptC 2013796..2014368 (+) 573 WP_012697492.1 LPS export ABC transporter periplasmic protein LptC -
  FX095_RS09875 lptA 2014355..2014906 (+) 552 WP_012697493.1 lipopolysaccharide transport periplasmic protein LptA -
  FX095_RS09880 lptB 2014903..2015637 (+) 735 WP_012697494.1 LPS export ABC transporter ATP-binding protein -
  FX095_RS09885 rpoN/rpoN1 2015645..2017075 (+) 1431 WP_088860996.1 RNA polymerase factor sigma-54 Machinery gene
  FX095_RS09890 hpf 2017155..2017493 (+) 339 WP_012697496.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FX095_RS09895 - 2017628..2018095 (+) 468 WP_088860997.1 PTS sugar transporter subunit IIA -
  FX095_RS09900 hprK 2018088..2019047 (+) 960 WP_088860998.1 HPr(Ser) kinase/phosphatase -
  FX095_RS09905 rapZ 2019028..2019864 (+) 837 WP_088860999.1 RNase adapter RapZ -
  FX095_RS09910 - 2019870..2020247 (+) 378 WP_088861000.1 NusG domain II-containing protein -
  FX095_RS09915 - 2020237..2020773 (+) 537 WP_034984899.1 Gx transporter family protein -
  FX095_RS09920 - 2020757..2021374 (+) 618 WP_088861001.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53002.67 Da        Isoelectric Point: 4.6674

>NTDB_id=1129055 FX095_RS09885 WP_088860996.1 2015645..2017075(+) (rpoN/rpoN1) [Laribacter hongkongensis isolate MGYG-HGUT-02398]
MKQSLQLKLSQQLTLTPQLQQSIKLLQLSTLDLQQEVEQFLADNPLLERVEDGEHDDSANGADEPAELAPAEHAGSDDPR
EHDDSARDLDTLNDWSSSGIRGSDEDDGWDPHANLIRPQSLREHLLAQLAEVPLSARDRAVATFLVEEIDDDGYLPASLE
SLAEQLPASLEVELDELTIALRLIQQFEPAGVGARDLTESLLLQLRARSGTDECTLAHTIVRDHLQLLANRDFTRLRRAT
SADDKALRQAQALIASLNPRPAAGFASGDTHYVMADVIVRRDRQGIWQAHLNPASQPRLKVNQMYANLLGRCRGEGGELS
GRLQEAKWLIRNIEQRADTILRVSSVIVERQQGFFEQGELLMKPMVLRDVAEELGLHESTISRVTSNKYLLCPRGIFELK
YFFGSALDTDSGEECSATAIKARIRRLIAEEDARKPLSDNTIADLLGEEGIQVARRTVAKYREALLIPPASQRKMI

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=1129055 FX095_RS09885 WP_088860996.1 2015645..2017075(+) (rpoN/rpoN1) [Laribacter hongkongensis isolate MGYG-HGUT-02398]
ATGAAACAAAGCCTCCAGCTCAAACTAAGCCAGCAACTCACGCTGACCCCGCAACTGCAACAGTCGATCAAGCTCCTGCA
GCTGTCGACACTGGACTTGCAGCAGGAAGTCGAGCAGTTCCTGGCCGACAACCCCCTGCTGGAGCGTGTCGAAGATGGTG
AACACGATGACAGTGCCAATGGTGCTGACGAACCGGCAGAACTGGCTCCGGCCGAGCACGCTGGCAGCGACGATCCGCGC
GAGCACGATGACAGTGCCCGCGACCTGGACACGCTGAACGACTGGAGCAGCAGCGGCATCCGCGGCAGTGACGAGGACGA
CGGCTGGGACCCGCATGCCAACCTGATCCGTCCGCAATCGTTGCGCGAGCACCTGCTGGCACAGCTGGCCGAAGTGCCGC
TGTCGGCCCGCGACCGGGCAGTCGCCACCTTTCTGGTCGAAGAAATCGACGATGATGGCTACCTGCCGGCCTCGCTGGAG
TCACTGGCGGAGCAATTACCGGCATCGCTGGAAGTGGAACTGGACGAACTGACCATCGCCTTGCGGCTGATCCAGCAGTT
CGAGCCGGCCGGCGTGGGCGCGCGTGACCTGACCGAATCGCTCCTGCTCCAGTTGCGGGCCCGCTCCGGCACCGACGAAT
GCACACTGGCACACACTATCGTGCGTGACCATCTGCAACTGCTGGCCAACCGTGATTTTACCCGCCTGCGCCGCGCCACC
AGTGCCGACGACAAGGCGCTGAGACAGGCCCAGGCGCTGATCGCTTCGCTCAACCCGCGCCCGGCGGCCGGCTTTGCCAG
TGGCGACACACATTACGTCATGGCAGACGTCATCGTGCGGCGCGACCGTCAGGGAATCTGGCAGGCACACTTGAATCCCG
CGTCACAGCCCCGATTAAAGGTGAACCAGATGTACGCCAACCTGCTCGGCCGTTGCCGGGGCGAGGGGGGCGAGCTGTCA
GGACGCCTGCAGGAAGCCAAATGGCTGATCCGCAATATCGAACAACGGGCCGACACTATACTCAGGGTGTCAAGTGTGAT
CGTGGAGCGCCAGCAGGGTTTCTTCGAACAGGGCGAGCTGCTGATGAAACCGATGGTGCTGCGTGATGTTGCAGAGGAAC
TGGGATTGCACGAATCCACCATCTCGCGCGTGACCAGCAACAAATACCTGCTGTGTCCGCGCGGCATTTTCGAGCTGAAG
TATTTTTTCGGATCCGCGCTTGATACGGATTCCGGCGAAGAATGCTCGGCTACGGCCATCAAGGCCCGCATCCGGCGCCT
GATTGCCGAAGAAGACGCCAGAAAGCCGCTTTCAGACAACACCATTGCCGATCTTCTGGGAGAAGAAGGCATCCAGGTTG
CCCGCCGGACCGTGGCGAAATACCGTGAAGCCTTGCTGATTCCCCCCGCCAGCCAGCGCAAGATGATTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-474)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(114-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248LKC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.071

100

0.555

Multiple sequence alignment