Detailed information NTG1129046

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FX095_RS01140
• Genome accession: NZ_LR698992
• Coordinates: 235625..236827 (-)
• Length: 400 a.a.
• NCBI ID: WP_088859900.1
• Uniprot ID: A0A248LF04
• Organism: Laribacter hongkongensis isolate MGYG-HGUT-02398
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 230625..241827

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FX095_RS01125	rpoH	233005..233853 (-)	849	WP_088859899.1	RNA polymerase sigma factor RpoH	-
FX095_RS01130	ftsX	234037..234945 (-)	909	WP_012695722.1	permease-like cell division protein FtsX	-
FX095_RS01135	ftsE	234942..235595 (-)	654	WP_012695723.1	cell division ATP-binding protein FtsE	-
FX095_RS01140	pilA	235625..236827 (-)	1203	WP_088859900.1	signal recognition particle-docking protein FtsY	Machinery gene
FX095_RS01145	-	236915..238297 (+)	1383	WP_088859901.1	pitrilysin family protein	-
FX095_RS01150	-	238287..239642 (+)	1356	WP_088859902.1	pitrilysin family protein	-
FX095_RS01155	rsmD	239623..240198 (+)	576	WP_088859903.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
FX095_RS01160	-	240256..240507 (+)	252	WP_012695728.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 42534.63 Da
• Isoelectric Point: 5.0811

>NTDB_id=1129046 FX095_RS01140 WP_088859900.1 235625..236827(-) (pilA) [Laribacter hongkongensis isolate MGYG-HGUT-02398]
MFSFFKRKSKPDPQTGHEAAPPAPASEAPASSENTISQPAATELPVTTPAMQEEAAVVAVEPEPQTIPEPEPEPAAPVAA
VEPSPVPAVVASEATAPRKQSWSERLKAGLSKTRDKLGKQLAGLFGGGQIDEDLYDELETILLTSDMGVAATQHLLEDVR
RRVSLKGLKDASQLKDALKESLMDLIGPLEKPLDLDHSGPLVIMMAGVNGAGKTTSIGKLAKYFQGHRKSVLLAAGDTFR
AAAREQLAEWGTRNQVTVISQQGGDAAAVCFDAVQAAQARKIDIVLADTAGRLPTQLHLMEEIRKVKRVISKALPQAPHE
ILLVLDANTGQNALAQVKAFDDALGLTGLILTKLDGTAKGGVIAAIARERPVPMYFVGVGETLDDLRPFSAREYVDALFD

Nucleotide

• Length: 1203 bp

>NTDB_id=1129046 FX095_RS01140 WP_088859900.1 235625..236827(-) (pilA) [Laribacter hongkongensis isolate MGYG-HGUT-02398]
ATGTTCAGCTTTTTCAAACGCAAATCCAAACCTGATCCGCAAACCGGCCACGAAGCCGCCCCCCCTGCTCCGGCCAGCGA
GGCGCCGGCCAGCAGCGAAAACACCATCAGCCAGCCGGCAGCCACCGAACTGCCCGTAACGACTCCGGCCATGCAGGAGG
AGGCAGCAGTGGTCGCCGTGGAGCCGGAACCACAGACCATCCCGGAACCTGAACCCGAACCGGCAGCGCCTGTCGCAGCG
GTCGAACCTTCTCCGGTCCCCGCGGTTGTCGCCAGCGAAGCCACTGCACCGCGCAAGCAGTCGTGGAGCGAACGCCTCAA
GGCCGGCCTCTCCAAGACCCGCGACAAGCTCGGCAAGCAGCTGGCCGGCCTGTTTGGCGGCGGCCAGATCGACGAGGACC
TGTACGACGAGCTGGAAACCATCCTGCTGACCTCCGACATGGGCGTCGCTGCCACCCAGCATCTCCTGGAAGATGTGCGC
CGCCGCGTCAGTCTCAAGGGCCTCAAAGATGCCAGCCAGCTGAAAGATGCATTGAAAGAATCGCTGATGGACCTGATCGG
TCCCTTAGAAAAGCCGCTGGATCTGGATCACAGCGGTCCGCTGGTCATCATGATGGCGGGCGTCAACGGGGCCGGAAAAA
CCACCTCCATCGGCAAGCTGGCCAAGTATTTCCAGGGACACCGCAAAAGCGTGCTGCTGGCAGCCGGCGACACCTTTCGC
GCAGCTGCGCGCGAGCAGCTGGCCGAATGGGGCACGCGCAACCAGGTGACGGTCATCAGCCAGCAGGGCGGTGATGCAGC
AGCGGTGTGCTTTGATGCCGTCCAGGCCGCACAGGCACGCAAGATCGACATCGTGCTGGCCGATACCGCCGGGCGACTGC
CGACCCAGCTGCACCTGATGGAGGAAATCCGCAAGGTCAAGCGCGTCATCAGCAAGGCGCTGCCGCAGGCCCCGCACGAA
ATCCTGCTGGTGCTGGATGCCAACACCGGGCAGAACGCGCTGGCACAGGTCAAGGCATTCGATGATGCGCTGGGACTGAC
CGGCCTGATCCTGACCAAGCTGGACGGCACGGCCAAGGGGGGCGTGATCGCCGCCATCGCCCGCGAACGGCCGGTACCGA
TGTACTTTGTCGGTGTCGGTGAAACACTGGACGACCTGCGGCCGTTCTCGGCACGCGAGTACGTGGACGCCCTGTTCGAC
TAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (201-399)

• SRP54-type protein, helical bundle domain (SRP54_N) (117-182)

3D structure

• AlphaFold DB: A0A248LF04

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	60.284	100	0.638