Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FXZ10_RS16965 Genome accession   NZ_LR698965
Coordinates   3348763..3350139 (-) Length   458 a.a.
NCBI ID   WP_052654242.1    Uniprot ID   A0A098EQ86
Organism   Planococcus massiliensis isolate MGYG-HGUT-01482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3343763..3355139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXZ10_RS16940 cysE 3343875..3344513 (-) 639 WP_052654230.1 serine O-acetyltransferase -
  FXZ10_RS16945 gltX 3344853..3346316 (-) 1464 WP_052654233.1 glutamate--tRNA ligase -
  FXZ10_RS16950 ispF 3346356..3346856 (-) 501 WP_052654236.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FXZ10_RS16955 ispD 3346853..3347548 (-) 696 WP_052654238.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FXZ10_RS16960 - 3347562..3348659 (-) 1098 WP_052654240.1 PIN/TRAM domain-containing protein -
  FXZ10_RS16965 radA 3348763..3350139 (-) 1377 WP_052654242.1 DNA repair protein RadA Machinery gene
  FXZ10_RS16970 clpC 3350200..3352644 (-) 2445 WP_052654245.1 ATP-dependent protease ATP-binding subunit ClpC -
  FXZ10_RS16975 - 3352641..3353735 (-) 1095 WP_052654248.1 protein arginine kinase -
  FXZ10_RS16980 - 3353725..3354258 (-) 534 WP_052654251.1 UvrB/UvrC motif-containing protein -
  FXZ10_RS16985 - 3354270..3354740 (-) 471 WP_052654253.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49937.43 Da        Isoelectric Point: 6.4247

>NTDB_id=1128728 FXZ10_RS16965 WP_052654242.1 3348763..3350139(-) (radA) [Planococcus massiliensis isolate MGYG-HGUT-01482]
MAKKKTKFVCQSCGYESAKWMGKCPGCGEWNQMVEEVEVAAPKGTRGAFQHSAAVPQKAVSINAIETKEEPRVETELEEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGSRVLYISGEESIRQTKLRAQRLNAASSELYIYAETNLELIH
HTIEDVAPDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQERSSGAAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDQNRVSLLMAVLEKRMGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSYRDLAPNVYDCIIGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1128728 FXZ10_RS16965 WP_052654242.1 3348763..3350139(-) (radA) [Planococcus massiliensis isolate MGYG-HGUT-01482]
ATGGCTAAGAAAAAGACGAAGTTTGTATGCCAGTCGTGCGGTTATGAGTCAGCTAAATGGATGGGGAAATGCCCAGGCTG
CGGAGAATGGAACCAAATGGTAGAAGAAGTGGAAGTGGCTGCACCTAAAGGGACGCGAGGAGCATTTCAGCATTCGGCTG
CCGTTCCGCAAAAAGCGGTTTCCATTAACGCTATTGAAACAAAAGAAGAGCCGCGCGTCGAAACGGAGCTTGAAGAATTA
AACCGTGTGCTCGGCGGCGGGATTGTTCCAGGGTCGCTTGTATTAATCGGCGGGGACCCGGGGATCGGGAAATCGACTTT
GCTGCTTCAGGTATCTGCGATGCTTGCGAATAGCGGAAGCCGGGTTTTGTATATTTCCGGTGAAGAATCGATTCGCCAAA
CCAAGTTGCGGGCGCAGCGGTTGAATGCGGCCTCTTCGGAGCTTTATATCTATGCAGAAACCAATTTGGAATTAATTCAT
CATACGATAGAAGATGTAGCGCCGGATTTTGTGATTGTCGATTCCATCCAAACGGTGCATCATCCGGAAGTAACGTCAGC
ACCCGGAAGTGTGACGCAAGTTCGAGAAAGCACCGCTGAATTAATGCGGATTGCTAAGACGAAGAACATTGCGATTTTCC
TAGTAGGGCACGTAACAAAAGAGGGGCAGATTGCAGGGCCGCGAATTTTGGAGCATATGGTGGATACCGTGTTGTATTTT
GAAGGCGAACGCCATCATACGTACCGGATTTTGCGCAGTGTCAAAAACCGTTTTGGATCGACCAATGAAATTGCGATTTT
CGAAATGCTGCAAAGCGGCTTGAAAGAAGTGCTGAACCCTTCCGAATTGTTTCTTCAAGAGCGTTCAAGCGGGGCAGCAG
GCTCCACAGTCGTAGCATCCATGGAAGGAACTCGCCCGATTCTAGTTGAAATCCAGGCATTGGTTACGCCTTCGAGCTTT
AATTATCCGAAGCGGATGGCTACAGGGATCGATCAAAACCGGGTATCGCTTTTGATGGCCGTGCTTGAGAAGCGGATGGG
CATGTTGCTGCAGGCGCAAGATGCGTATATCAAAGTGGCGGGCGGCGTGAAATTGGACGAACCGGCGATCGATTTGGCCG
TACTTGCGAGCATCGTTTCCAGTTACCGTGACCTCGCGCCGAATGTCTATGATTGTATAATTGGTGAAGTAGGTTTAACA
GGGGAGATCCGGCGGGTATCCCGTATTGAACAGCGGGTTCAGGAAGCGGCGAAATTAGGGTTCAAACGGGCCATTATTCC
AGCTTCGAACCTTGGTGGCTGGGATTATCCGGAAGGAATCCGAGTCGTTGGCGTTGAAAGTGTGAATGATGCATTAAAAG
AGATTTTCCCACAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098EQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.185

98.908

0.714
  radA Streptococcus pneumoniae Rx1

63.158

99.563

0.629
  radA Streptococcus pneumoniae D39

63.158

99.563

0.629
  radA Streptococcus pneumoniae R6

63.158

99.563

0.629
  radA Streptococcus pneumoniae TIGR4

63.158

99.563

0.629
  radA Streptococcus mitis NCTC 12261

63.158

99.563

0.629
  radA Streptococcus mitis SK321

63.158

99.563

0.629

Multiple sequence alignment