Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FXZ10_RS09080 Genome accession   NZ_LR698965
Coordinates   1839105..1840802 (-) Length   565 a.a.
NCBI ID   WP_052651733.1    Uniprot ID   A0A098EKR3
Organism   Planococcus massiliensis isolate MGYG-HGUT-01482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1834105..1845802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXZ10_RS09060 - 1835013..1837058 (-) 2046 WP_052651729.1 sigma-54 interaction domain-containing protein -
  FXZ10_RS09065 - 1837182..1837427 (+) 246 WP_052651730.1 DUF2627 domain-containing protein -
  FXZ10_RS09070 - 1837454..1838179 (-) 726 WP_052651731.1 glycerophosphodiester phosphodiesterase -
  FXZ10_RS09075 spo0A 1838313..1839071 (-) 759 WP_052651732.1 sporulation transcription factor Spo0A -
  FXZ10_RS09080 recN 1839105..1840802 (-) 1698 WP_052651733.1 DNA repair protein RecN Machinery gene
  FXZ10_RS09085 ahrC 1840822..1841271 (-) 450 WP_052651734.1 transcriptional regulator AhrC/ArgR -
  FXZ10_RS09090 - 1841466..1842290 (-) 825 WP_052651735.1 TlyA family RNA methyltransferase -
  FXZ10_RS09095 dxs 1842287..1844188 (-) 1902 WP_052654516.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FXZ10_RS09100 - 1844284..1845162 (-) 879 WP_052651736.1 polyprenyl synthetase family protein -
  FXZ10_RS09105 xseB 1845159..1845395 (-) 237 WP_052651737.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63715.58 Da        Isoelectric Point: 5.2870

>NTDB_id=1128713 FXZ10_RS09080 WP_052651733.1 1839105..1840802(-) (recN) [Planococcus massiliensis isolate MGYG-HGUT-01482]
MLRELDIRNFAIIDSLTVSFTEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFTLDNEKHPVFRK
LEEFGIDSSDGDILLRRELNDRGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHLHLLDQFAGKTLTKAK
ESYFHTYDKYMKLKREFASYNENEQQIAQRIDLLTFQLREIEAAELIAGEEEELQQERKKLQNFNKIFESVSAAHEAIQG
ESKGLDWVGSAMSELEHAASVDEQLNSHSETLSSAFYLIQDVSADIKRILDDMEFDPARLNEIEQRLVLIQSLKRKYGAS
VEDILLYHETQVDELDKLINRDQRIQLDQEKLKELTEDLRVEAEELTILRKKAAAKLGKAIMEQLRELHMGKASFEVNFA
SLPGGRFDRTGRDAIAFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVHSQVLCISHLPQVAAMADQHLFIEKKVEKQRTTTAVHELEGYERTEEMSRMLSGAEITDLTLQHAEELLTLARDR
KLAMR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=1128713 FXZ10_RS09080 WP_052651733.1 1839105..1840802(-) (recN) [Planococcus massiliensis isolate MGYG-HGUT-01482]
ATGCTTCGGGAACTGGATATACGCAATTTTGCGATCATCGATTCCTTGACAGTCAGCTTTACAGAAGGGTTGACAGTGTT
GACGGGGGAAACTGGGGCCGGAAAATCGATTATTATCGATGCGGTCCATTTATTGGCTGGCGGCAGAGGCAGCCAGGAAT
TTATTCGCCATGGCGCTAAAAAAGCCGAAATAGAAGGATTGTTCACATTGGATAATGAAAAGCATCCAGTGTTTCGCAAA
TTAGAAGAATTCGGCATTGATTCAAGTGATGGGGATATTCTGCTCCGCAGGGAATTGAACGACCGCGGAAAAAATGTCTG
CCGGATCAACGGCAAACTAGTAACCATTTCAATACTTCGTGAAGTGGGCGCTGCCCTCATCGACATTCACGGCCAGCACG
AAACGCAGGAATTGATGGATGAAAAACAGCATCTTCATTTGCTGGATCAATTTGCCGGAAAAACGTTGACGAAAGCGAAA
GAAAGTTATTTCCACACGTATGACAAATACATGAAACTGAAGCGTGAATTTGCCTCTTACAATGAAAACGAGCAGCAGAT
TGCCCAGCGCATCGATTTGCTGACGTTTCAGCTGCGGGAAATCGAAGCGGCAGAACTGATCGCTGGCGAAGAGGAAGAGC
TCCAGCAAGAACGAAAAAAACTTCAAAATTTCAATAAAATCTTTGAATCGGTTTCGGCCGCGCATGAAGCGATCCAAGGG
GAGTCGAAAGGGCTCGATTGGGTAGGGTCTGCCATGTCGGAACTTGAACATGCCGCTTCTGTAGATGAACAGTTGAATAG
CCATTCCGAAACGCTTTCAAGCGCTTTCTATTTAATCCAAGACGTGTCGGCTGATATTAAGCGGATTCTGGATGATATGG
AGTTTGACCCGGCCCGTCTGAATGAAATCGAGCAGCGCCTTGTTTTGATCCAGTCGCTTAAACGGAAGTACGGGGCTTCG
GTGGAAGATATTCTGTTGTACCATGAAACGCAAGTGGACGAATTGGACAAGTTGATCAACCGTGATCAGCGCATTCAATT
GGATCAGGAAAAACTGAAGGAATTGACTGAAGACCTGCGCGTGGAAGCGGAAGAGCTGACGATTTTACGGAAAAAAGCCG
CCGCGAAGCTTGGCAAAGCCATCATGGAACAATTGCGCGAGCTCCATATGGGAAAAGCTTCTTTTGAAGTGAATTTCGCT
TCGCTGCCTGGCGGAAGGTTTGACCGCACCGGCCGCGACGCCATTGCGTTCTATATATCAACGAATCTTGGCGAACCGCT
GAAGCCGTTGACTAAAGTGGCCTCCGGCGGCGAATTGTCGCGGATGATGCTGGCGCTGAAAACGATCTTTTCAAAACACC
AAGGCATTACGTCCATTATCTTCGATGAAGTCGATACGGGAGTCAGCGGTAGAGTGGCGCAGGCGATCGCCGAAAAAATT
GCCGCCATCTCGGTCCATTCCCAAGTGCTGTGCATTTCCCATTTGCCGCAAGTCGCCGCGATGGCTGACCAGCATTTATT
CATCGAAAAGAAAGTGGAAAAACAGCGTACAACCACAGCCGTCCATGAACTTGAAGGCTATGAACGGACAGAAGAAATGA
GCAGAATGCTCTCAGGAGCGGAAATTACTGATTTGACTTTACAGCATGCCGAAGAATTGCTCACGCTTGCGCGCGACAGA
AAACTTGCCATGAGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098EKR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.158

100

0.536

Multiple sequence alignment