Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BWLFYP14_RS10030 Genome accession   NZ_LR655209
Coordinates   2238073..2239941 (-) Length   622 a.a.
NCBI ID   WP_144180453.1    Uniprot ID   -
Organism   Bifidobacterium breve isolate B.breve_1_mod     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2233073..2244941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWLFYP14_RS10015 (BILOC7D69C13_01939) - 2233642..2235060 (-) 1419 WP_144180447.1 MFS transporter -
  BWLFYP14_RS10020 (BILOC7D69C13_01940) - 2235165..2236103 (+) 939 WP_144181943.1 FAD:protein FMN transferase -
  BWLFYP14_RS10025 (BILOC7D69C13_01941) rcrQ 2236112..2237941 (-) 1830 WP_144181944.1 ABC transporter ATP-binding protein Regulator
  BWLFYP14_RS10030 (BILOC7D69C13_01942) rcrP 2238073..2239941 (-) 1869 WP_144180453.1 ABC transporter ATP-binding protein Regulator
  BWLFYP14_RS10040 (BILOC7D69C13_01943) - 2240125..2240646 (-) 522 WP_050825218.1 MarR family winged helix-turn-helix transcriptional regulator -
  BWLFYP14_RS10045 (FQ313_RS10045) - 2241271..2241495 (+) 225 WP_230577554.1 DUF1684 domain-containing protein -
  BWLFYP14_RS10050 (BILOC7D69C13_01944) - 2241583..2243106 (-) 1524 WP_144181945.1 amino acid permease -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68039.71 Da        Isoelectric Point: 5.2074

>NTDB_id=1128544 BWLFYP14_RS10030 WP_144180453.1 2238073..2239941(-) (rcrP) [Bifidobacterium breve isolate B.breve_1_mod]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMAMVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFKNVSFTYPDSREAMLQGINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTPAGRKREALQLAADAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAE
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHKELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=1128544 BWLFYP14_RS10030 WP_144180453.1 2238073..2239941(-) (rcrP) [Bifidobacterium breve isolate B.breve_1_mod]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACGCCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAGATGCTGCTGGTCTCGCTCGGCTCGGTCTGCTGCGCCATCATCACCGGCTATATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTACGCTCGCTCGAATTTCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTTGTGATTCTGCTGGTCGCTGTCGTAATCCTCATGGCGATGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCCAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCGCGCGCCGACGTGTCCGCACAGCGCGTGATGGAAGTGCTCAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGATATCGCAAAGACCGGGCAGACGGGCACTGTGGAATTCAAGAACGT
GAGCTTCACCTACCCGGATTCGCGCGAGGCCATGCTGCAGGGCATCAACTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTGTCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTACGTGCCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAATATCAGCTATGGCGACAAGCCCGGCGAGAACGACGCGGTCGAACTCGCGGATA
CCTCTACTCCCGCCGGCCGTAAGCGTGAGGCGCTTCAGCTGGCCGCCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAGCAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CAGAAATCCTGATTTTCGATGACTCGTTCTCTGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCGAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTTGTGGGACAAGGCACACACAAGGAGTTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-542)

ABC transporter transmembrane region (ABC_membrane)

(53-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.576

100

0.494

Multiple sequence alignment