Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BWLFYP14_RS10025 Genome accession   NZ_LR655209
Coordinates   2236112..2237941 (-) Length   609 a.a.
NCBI ID   WP_144181944.1    Uniprot ID   -
Organism   Bifidobacterium breve isolate B.breve_1_mod     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2231112..2242941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWLFYP14_RS11165 - 2231692..2231850 (+) 159 WP_003829623.1 hypothetical protein -
  BWLFYP14_RS10000 (BILOC7D69C13_01937) rsmI 2231971..2232990 (-) 1020 WP_074525213.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BWLFYP14_RS10015 (BILOC7D69C13_01939) - 2233642..2235060 (-) 1419 WP_144180447.1 MFS transporter -
  BWLFYP14_RS10020 (BILOC7D69C13_01940) - 2235165..2236103 (+) 939 WP_144181943.1 FAD:protein FMN transferase -
  BWLFYP14_RS10025 (BILOC7D69C13_01941) rcrQ 2236112..2237941 (-) 1830 WP_144181944.1 ABC transporter ATP-binding protein Regulator
  BWLFYP14_RS10030 (BILOC7D69C13_01942) rcrP 2238073..2239941 (-) 1869 WP_144180453.1 ABC transporter ATP-binding protein Regulator
  BWLFYP14_RS10040 (BILOC7D69C13_01943) - 2240125..2240646 (-) 522 WP_050825218.1 MarR family winged helix-turn-helix transcriptional regulator -
  BWLFYP14_RS10045 (FQ313_RS10045) - 2241271..2241495 (+) 225 WP_230577554.1 DUF1684 domain-containing protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66522.86 Da        Isoelectric Point: 5.9488

>NTDB_id=1128543 BWLFYP14_RS10025 WP_144181944.1 2236112..2237941(-) (rcrQ) [Bifidobacterium breve isolate B.breve_1_mod]
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIVALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRVTNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKASQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISAC
KAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=1128543 BWLFYP14_RS10025 WP_144181944.1 2236112..2237941(-) (rcrQ) [Bifidobacterium breve isolate B.breve_1_mod]
ATGCCAAGAGGACCTATGGGCCGCGGAGGTGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAGCTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATTGTCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCATGGCAAGCCGGTGCTCAATTCC
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
GAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCGCAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGTTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCTCGCGTCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACAACAACTG
GATCATGGCGCTGTGCGCAATCGGTTCAAGCATCATCGGCCTGATCATCATGATGGTCATTATGAAGGCCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAGGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCAGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTC
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGTC
GGAAATGGCTGACGAATCCGGCAAGCAGGCGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ACGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTGCTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATTTTTAATGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCAGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGAGAATTCGTCGCTGTC
CGCTGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTACAGGACGCACCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTCGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATT
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCACGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGTTGCTGGCTGCTGGTGGCTTCTACGCTGATTTGTACAACAGCCAGTTCGCGTTGGCGGGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(387-534)

ABC transporter transmembrane region (ABC_membrane)

(39-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.846

96.059

0.517

Multiple sequence alignment