Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FQT45_RS10035 Genome accession   NZ_LR595858
Coordinates   2042351..2043064 (+) Length   237 a.a.
NCBI ID   WP_077323203.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2037351..2048064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS10025 (NCTC10228_02066) treC 2038442..2040073 (-) 1632 WP_077323201.1 alpha,alpha-phosphotrehalase -
  FQT45_RS10030 (NCTC10228_02067) treP 2040139..2042133 (-) 1995 WP_077323202.1 PTS system trehalose-specific EIIBC component -
  FQT45_RS10035 (NCTC10228_02068) treR 2042351..2043064 (+) 714 WP_077323203.1 trehalose operon repressor Regulator
  FQT45_RS10040 (NCTC10228_02069) yaaA 2043197..2043928 (+) 732 WP_077323204.1 peroxide stress protein YaaA -
  FQT45_RS10045 (NCTC10228_02070) nrdG 2044049..2044663 (-) 615 WP_077323205.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  FQT45_RS10050 (NCTC10228_02071) - 2044670..2045173 (-) 504 WP_077323206.1 GNAT family N-acetyltransferase -
  FQT45_RS10055 (NCTC10228_02072) - 2045184..2046116 (-) 933 WP_077323207.1 Gfo/Idh/MocA family protein -
  FQT45_RS10545 (NCTC10228_02073) - 2046138..2046290 (-) 153 WP_007893810.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27489.72 Da        Isoelectric Point: 9.2607

>NTDB_id=1128506 FQT45_RS10035 WP_077323203.1 2042351..2043064(+) (treR) [Streptococcus pseudoporcinus strain NCTC10228]
MKKYDYIFKDLESKISKGVYAIDDFLPTEFELSKEYNASRDTIRKALTLLVKDGLVKKQQGRGTQVIKHHQILFPISELT
SYHELVTYFNMDSKTNVIAIDKLIVDADISKLTGFPLHSILWRITRQRVVDGIASVLDIDYLSKDIVPTISRDIAEKSLY
HYLEKDLNLAIDFALKEVTIDQVNDKDKILLDLGSDRHLVSVKSKVYLSSNEQFQFTESRHKLEKFKFVDFARRKPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1128506 FQT45_RS10035 WP_077323203.1 2042351..2043064(+) (treR) [Streptococcus pseudoporcinus strain NCTC10228]
ATGAAGAAGTATGACTATATATTTAAAGATTTAGAATCAAAAATATCCAAAGGAGTTTACGCTATTGATGATTTTTTACC
AACTGAATTCGAATTAAGCAAAGAATACAATGCCAGTCGTGACACCATTCGCAAAGCTTTAACTCTCTTGGTTAAAGATG
GCTTAGTCAAAAAACAACAAGGTCGAGGAACACAAGTTATTAAACATCATCAGATTCTTTTTCCTATTTCAGAGTTAACA
AGTTATCATGAGTTAGTCACCTATTTTAATATGGACTCTAAAACCAATGTTATTGCTATCGACAAGTTAATTGTGGATGC
TGATATATCAAAATTGACAGGATTTCCTCTCCATTCCATTCTTTGGCGAATCACTCGCCAAAGGGTTGTTGACGGTATTG
CCTCTGTTCTAGACATTGACTACCTTAGTAAAGATATTGTACCAACTATCAGTCGTGACATTGCTGAAAAATCTCTTTAC
CACTATCTAGAAAAAGACCTCAACTTAGCTATTGATTTTGCCTTAAAAGAAGTCACCATTGATCAAGTCAATGACAAAGA
TAAAATTTTACTAGATTTAGGCTCAGATCGTCACCTTGTTTCCGTTAAATCAAAAGTCTACCTCTCATCTAATGAACAAT
TCCAGTTTACTGAGAGTCGTCATAAGTTAGAAAAATTTAAATTTGTGGATTTTGCACGACGTAAACCCAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.103

98.734

0.633

Multiple sequence alignment