Detailed information NTG1128505

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FQT45_RS09945
• Genome accession: NZ_LR595858
• Coordinates: 2022058..2024499 (-)
• Length: 813 a.a.
• NCBI ID: WP_077323189.1
• Uniprot ID: -
• Organism: Streptococcus pseudoporcinus strain NCTC10228
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 2017058..2029499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FQT45_RS09930 (NCTC10228_02046)	-	2018271..2019797 (+)	1527	WP_143880469.1	IS1182 family transposase	-
FQT45_RS09935 (NCTC10228_02047)	groL	2019886..2021514 (-)	1629	WP_007893807.1	chaperonin GroEL	-
FQT45_RS09940 (NCTC10228_02048)	groES	2021554..2021844 (-)	291	WP_077323188.1	co-chaperone GroES	-
FQT45_RS09945 (NCTC10228_02049)	clpC	2022058..2024499 (-)	2442	WP_077323189.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
FQT45_RS09950 (NCTC10228_02050)	-	2024499..2024960 (-)	462	WP_077323190.1	CtsR family transcriptional regulator	-
FQT45_RS09955	-	2025133..2025336 (-)	204	WP_077323191.1	cold-shock protein	-
FQT45_RS09960 (NCTC10228_02052)	-	2025686..2025955 (+)	270	WP_077323192.1	hypothetical protein	-
FQT45_RS09965 (NCTC10228_02053)	-	2025958..2028027 (+)	2070	WP_077323193.1	cation:proton antiporter	-
FQT45_RS09970 (NCTC10228_02054)	-	2028151..2029113 (+)	963	WP_077323194.1	ring-cleaving dioxygenase	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90468.99 Da
• Isoelectric Point: 5.9118

>NTDB_id=1128505 FQT45_RS09945 WP_077323189.1 2022058..2024499(-) (clpC) [Streptococcus pseudoporcinus strain NCTC10228]
MIDYSLKMQEIFKQAQYQAARFDSQYLETWHLLLAMVVVNNSLAGLVFNEFDAKVTMEEYEAAAILAMGQTPNDDVKEWT
LKGQSRTLTKILQFSDAIRQVTGAQEVGSEHVLFALLLNPDVMATRLLEMAGFKLRDEGQGDLKISDLRKAIERQAAYSK
ETIKAIYELRKPKKTKAGGTFSDMMKPPSSAGDLSDFTRDLTQMASQGLLEPVIGREKEITRMVQVLSRKTKNNPVLVGD
AGVGKTALAYGLAQRIVEGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIEADGKIILFVDELHTIMGSGS
GIDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPNLEDAYQILLGLKSSYEMYHNVRISD
QAVKVAVKVAHRYLTSKNLPDSAIDLLDEASATVQGLIKKETPSFLSSIDQAILDGNFKEVTSLLKANKKTKPSPTPVTE
DDIMATLSRLSGIPLEKISQADSQKYLQLEKELHKRVIGQDEAISAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVGKTE
LAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQV
LDDGVLTDSRGRKVDFTNTIIIMTSNLGATALRDDKTVGFGARDVSQDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LSQEDMQQVVRIMVKPLIAALEEKGITLKFQPSALKYLSEKGYDLEMGARPLRRTIQTEVEDKLSELLLSGQLASGHKLK
IGLAKGKIKCDIE

Nucleotide

• Length: 2442 bp

>NTDB_id=1128505 FQT45_RS09945 WP_077323189.1 2022058..2024499(-) (clpC) [Streptococcus pseudoporcinus strain NCTC10228]
ATGATAGATTATTCACTAAAAATGCAGGAAATTTTCAAGCAGGCTCAATATCAGGCAGCTCGCTTTGATAGCCAATATTT
AGAAACATGGCATCTTCTTTTAGCGATGGTCGTGGTTAACAACTCACTAGCTGGACTTGTTTTCAATGAATTTGACGCTA
AAGTTACTATGGAAGAATATGAAGCGGCAGCTATTTTAGCTATGGGACAAACGCCAAATGATGATGTGAAAGAGTGGACC
TTGAAGGGTCAATCTAGAACCTTAACAAAAATTCTCCAATTTTCAGATGCTATCCGTCAGGTAACAGGTGCTCAGGAAGT
GGGGTCAGAACACGTCCTTTTTGCCCTATTGTTAAATCCTGATGTTATGGCAACTCGCTTACTAGAAATGGCTGGTTTTA
AACTACGGGATGAGGGTCAAGGGGATTTGAAAATCTCTGATTTACGTAAAGCAATTGAGAGGCAGGCTGCTTATAGTAAA
GAGACCATTAAGGCTATTTATGAATTGCGCAAACCTAAAAAAACAAAAGCAGGTGGGACATTCTCAGATATGATGAAACC
GCCAAGTTCAGCAGGTGACCTCTCTGATTTCACGCGTGATTTAACACAAATGGCCAGTCAAGGCCTTTTGGAACCGGTGA
TTGGCCGTGAAAAAGAAATTACTCGAATGGTTCAGGTGCTAAGCCGTAAAACTAAGAATAATCCTGTCTTAGTCGGAGAC
GCGGGTGTTGGGAAAACAGCCTTGGCATATGGTCTAGCTCAACGAATTGTCGAGGGAGCTATTCCTTACGAATTGCAGGA
TATGCGAGTTTTGGAACTAGACATGATGAGTGTGGTTGCAGGAACTCGTTTTCGGGGTGATTTTGAAGAACGAATGAACC
AAATCATAGATGATATTGAAGCAGATGGGAAAATTATTCTGTTTGTTGATGAATTACATACGATTATGGGTTCTGGAAGT
GGTATTGATAGTACTTTAGATGCGGCTAATATTTTAAAACCAGCTTTGTCTCGTGGGACACTACATATGGTAGGTGCGAC
GACTCAGGAAGAGTACCAAAAACATATTGAAAAAGACGCAGCCTTATCTCGTCGCTTTGCTAAAATTTTAATTGAAGAAC
CAAATCTTGAAGATGCTTACCAAATCCTTCTTGGACTAAAATCTTCTTATGAAATGTATCATAATGTTAGAATTTCAGAC
CAAGCTGTTAAAGTGGCAGTTAAGGTTGCACACCGTTATTTAACAAGTAAAAATTTGCCAGATTCAGCAATAGACCTCTT
AGATGAAGCCAGTGCAACGGTCCAAGGGCTCATAAAAAAAGAGACACCCTCCTTTTTAAGTTCTATAGACCAGGCTATCC
TCGATGGCAATTTTAAAGAAGTGACTAGCTTATTAAAAGCTAATAAGAAAACGAAGCCTAGCCCAACCCCGGTTACAGAA
GATGACATCATGGCAACTTTAAGTAGATTATCGGGGATACCACTTGAGAAAATTAGCCAAGCTGATAGTCAAAAATACCT
CCAATTAGAGAAAGAATTACACAAACGGGTTATTGGCCAAGACGAAGCTATTTCAGCTATTTCAAGGGCTATTCGTCGCA
ATCAATCTGGTATCCGAACTGGTAAGCGTCCAATTGGCTCATTTATGTTTCTAGGTCCAACAGGTGTTGGAAAAACAGAG
CTTGCTAAAGCCTTGGCTGAGGTTTTATTTGATGATGAGTCAGCATTAATCCGTTTCGATATGTCAGAATACATGGAGAA
ATTTGCAGCCAGTCGTCTCAATGGTGCCCCTCCAGGATATGTAGGCTATGATGAAGGTGGTGAACTGACAGAAAAAGTAA
GGAATAAACCTTATTCTGTTTTGCTTTTTGATGAAGTTGAAAAAGCTCATCCAGATATTTTCAATGTACTTCTTCAAGTT
TTGGACGATGGGGTACTGACAGACTCTCGTGGTCGAAAAGTTGATTTTACAAATACTATTATTATCATGACCAGTAATTT
AGGTGCGACAGCACTTCGCGATGATAAAACTGTAGGATTTGGTGCTCGAGATGTTAGTCAAGATCACCAAGCTATGGAAA
AACGTATTTTAGAGGAGCTAAAGAAAGCTTATCGTCCTGAATTTATTAATCGTATTGATGAAAAGGTTGTTTTCCACAGC
CTAAGTCAAGAAGATATGCAACAAGTGGTGAGGATTATGGTGAAACCGTTGATTGCTGCCTTAGAAGAAAAAGGAATCAC
TCTCAAATTTCAACCGTCAGCACTTAAATACCTATCTGAGAAAGGCTATGATCTGGAGATGGGAGCTCGTCCGCTTCGAA
GAACGATTCAAACAGAAGTTGAGGATAAATTGTCAGAATTACTCCTTTCAGGACAGTTAGCCTCTGGGCATAAATTAAAA
ATTGGTTTAGCCAAAGGCAAAATAAAATGTGACATAGAATAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• AAA lid domain (AAA_lid_9) (376-455)

• ATPase family associated with various cellular activities (AAA) (AAA) (236-368)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-51)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (101-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.908	100	0.749
clpC	Streptococcus thermophilus LMG 18311	72.482	100	0.726
clpC	Streptococcus thermophilus LMD-9	72.482	100	0.726
clpC	Streptococcus pneumoniae TIGR4	65.56	100	0.656
clpC	Streptococcus pneumoniae Rx1	65.56	100	0.656
clpC	Streptococcus pneumoniae D39	65.56	100	0.656
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.144	100	0.494
clpC	Bacillus subtilis subsp. subtilis str. 168	44.886	100	0.459