Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FQT45_RS09635 Genome accession   NZ_LR595858
Coordinates   1956511..1957884 (-) Length   457 a.a.
NCBI ID   WP_077322590.1    Uniprot ID   A0A4V6L2S6
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1951511..1962884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS09620 (NCTC10228_01984) - 1952359..1953705 (-) 1347 WP_077322588.1 GHKL domain-containing protein -
  FQT45_RS09625 (NCTC10228_01985) gltX 1954085..1955530 (-) 1446 WP_077322589.1 glutamate--tRNA ligase -
  FQT45_RS09630 (NCTC10228_01986) - 1955917..1956389 (-) 473 Protein_1850 beta-class carbonic anhydrase -
  FQT45_RS09635 (NCTC10228_01987) radA 1956511..1957884 (-) 1374 WP_077322590.1 DNA repair protein RadA Machinery gene
  FQT45_RS09640 (NCTC10228_01988) - 1957911..1958357 (-) 447 WP_077322591.1 dUTP diphosphatase -
  FQT45_RS09645 (NCTC10228_01989) - 1958478..1958837 (-) 360 WP_007892340.1 YbaN family protein -
  FQT45_RS09650 (NCTC10228_01990) - 1959018..1959620 (+) 603 WP_077322592.1 NADPH-dependent FMN reductase -
  FQT45_RS09655 (NCTC10228_01991) - 1959639..1960886 (+) 1248 WP_077322593.1 NAD(P)H-dependent oxidoreductase -
  FQT45_RS09660 (NCTC10228_01992) - 1960928..1961713 (-) 786 WP_077322594.1 epoxyqueuosine reductase QueH -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50039.34 Da        Isoelectric Point: 5.5895

>NTDB_id=1128504 FQT45_RS09635 WP_077322590.1 1956511..1957884(-) (radA) [Streptococcus pseudoporcinus strain NCTC10228]
MAKKKATFVCQECGYHSPKYLGRCPNCSAWSSFVEEVEVQELKNARVSLTGEKSRPVKLKDVDNLNYSRTQTNMDEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQEIRIEIE
KIQPDFLIIDPIQTIMSPDSSGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVTNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKAAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGLDIPQNIEVVGVSTVGEVLKAVFTKNTK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1128504 FQT45_RS09635 WP_077322590.1 1956511..1957884(-) (radA) [Streptococcus pseudoporcinus strain NCTC10228]
ATGGCTAAGAAAAAAGCAACATTTGTTTGTCAGGAATGTGGGTATCACTCTCCTAAATATTTAGGGCGTTGTCCCAACTG
CTCAGCCTGGTCTTCATTTGTGGAGGAAGTTGAAGTCCAAGAACTTAAAAATGCGCGTGTTAGCCTAACGGGTGAAAAAA
GTCGCCCGGTGAAACTAAAAGACGTTGATAACCTCAATTATTCCCGTACTCAGACCAACATGGATGAATTTAATCGAGTT
CTTGGCGGAGGTGTCGTTCCTGGCAGTCTTATCCTGATAGGAGGAGATCCTGGGATTGGTAAATCAACCTTACTCTTGCA
AGTTTCGACCCAGTTGGCCAATAAAGGAACTGTTTTATACGTTTCTGGGGAAGAATCAGCAGAACAAATTAAGTTGCGTA
GTGAACGTCTAGGTGAGATTGATAATGAATTTTATCTCTACGCCGAGACCAATATGCAAGAAATTAGAATTGAGATTGAG
AAAATTCAACCTGATTTCTTGATTATTGATCCTATTCAAACCATTATGAGTCCGGATAGTTCAGGTGTCCAAGGGTCAGT
TAGTCAGGTAAGAGAAGTAACAGCGGAACTCATGCAATTAGCTAAGACTAATAATATTGCGACCTTTATAGTTGGACATG
TTACTAAAGAAGGAACCATAGCGGGTCCAAGAATGCTGGAGCATATGGTGGATACGGTTCTTTATTTTGAAGGGGAACGT
CATCATACCTTTAGGATTTTGCGAGCTGTTAAAAATCGTTTTGGATCAACTAATGAAATTGGTATTTTTGAAATGCAATC
AGGTGGTCTGGTTGAAGTTACTAATCCCAGTCAAGTTTTTCTAGAGGAACGCTTAGATGGGGCCACAGGCTCAGCTATCG
TTGTTACCATGGAAGGGAGTCGGCCAATTTTAGCCGAGGTCCAATCTTTAGTCACGCCAACTGTTTTTGGTAATGCCCGA
AGAACAACGACAGGGCTAGATTTCAATCGAGTTAGTTTAATTATGGCTGTTTTGGAAAAACGCTGTGGTTTGCTGTTACA
GAATCAGGATGCCTATCTGAAGGCCGCTGGAGGTGTCAAATTAGATGAGCCTGCTATTGACTTGGCTGTTGCAGTTGCCA
TTGCTTCAAGTTATAAGGAGTTGCCAACCAACCCTCAAGAAGCCTTTCTAGGAGAAATTGGTTTGACGGGTGAGATTAGA
CGGGTGACCCGCATTGAACAAAGGATTAATGAGGCAGCTAAGCTTGGCTTCACCAAGATTTATGCCCCTAAAAACGCTTT
ACAAGGGTTAGATATCCCTCAAAATATAGAAGTTGTTGGTGTATCAACTGTAGGTGAGGTTCTTAAAGCTGTCTTTACTA
AAAATACCAAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(55-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V6L2S6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

85.398

98.906

0.845
  radA Streptococcus pneumoniae D39

85.398

98.906

0.845
  radA Streptococcus pneumoniae R6

85.398

98.906

0.845
  radA Streptococcus pneumoniae TIGR4

85.398

98.906

0.845
  radA Streptococcus mitis NCTC 12261

85.398

98.906

0.845
  radA Streptococcus mitis SK321

85.398

98.906

0.845
  radA Bacillus subtilis subsp. subtilis str. 168

60.706

99.125

0.602

Multiple sequence alignment