Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   FQT45_RS02765 Genome accession   NZ_LR595858
Coordinates   531944..534226 (-) Length   760 a.a.
NCBI ID   WP_077322040.1    Uniprot ID   A0A4U9XIG9
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 526944..539226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS02750 (NCTC10228_00556) ileS 527701..530502 (+) 2802 WP_077322038.1 isoleucine--tRNA ligase -
  FQT45_RS02755 (NCTC10228_00557) - 531033..531335 (-) 303 WP_003084009.1 DUF1827 family protein -
  FQT45_RS02760 (NCTC10228_00558) - 531385..531831 (-) 447 WP_007894611.1 NUDIX hydrolase -
  FQT45_RS02765 (NCTC10228_00559) clpE 531944..534226 (-) 2283 WP_077322040.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  FQT45_RS02770 (NCTC10228_00560) - 534505..534735 (+) 231 WP_077322042.1 DUF1797 family protein -
  FQT45_RS02775 (NCTC10228_00561) - 534969..535823 (+) 855 WP_077322043.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  FQT45_RS02780 (NCTC10228_00562) - 535820..536653 (+) 834 WP_077322045.1 NAD(P)H-hydrate dehydratase -
  FQT45_RS02785 (NCTC10228_00563) xseA 536800..538143 (+) 1344 WP_077322047.1 exodeoxyribonuclease VII large subunit -
  FQT45_RS02790 (NCTC10228_00564) - 538118..538336 (+) 219 WP_003084065.1 exodeoxyribonuclease VII small subunit -
  FQT45_RS02795 (NCTC10228_00565) - 538336..539205 (+) 870 WP_077322049.1 polyprenyl synthetase family protein -

Sequence


Protein


Download         Length: 760 a.a.        Molecular weight: 84260.33 Da        Isoelectric Point: 5.0532

>NTDB_id=1128475 FQT45_RS02765 WP_077322040.1 531944..534226(-) (clpE) [Streptococcus pseudoporcinus strain NCTC10228]
MLCQNCKLNEASIHLYANVNGTQKQIDLCQNCYQIMKTDANNSILGGMRSKSQNQNDSLNPLFDDFFGDLNNFRAFGDLP
NTPPTQTGRQNGGGSGGGNNRNGQGAVPGQNTKREPGLLEEFGINVTDIARNGDIDPVIGRDEEIIRVIEILNRRTKNNP
VLIGEPGVGKTAVVEGLAQKIVDGSVPHKLQHKEVIRLDVVNLVQGTGIRGQFEERMQKLMEEIRNRQDVILFIDEIHEI
VGAGTAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILKGIQAKYEDYHHV
KYSQDAIEAAANLSNRYIQDRFLPDKAIDLLDEAGSKLNLTLNFVDPKEIDKRLVEAENLKAQATRDEDFERAAYFRDQI
AKYKELQTQKVDDQDTPIITEKTIEAIVEQKTNIPVGDLKEKEQSQLVNLSDDLKAHVIGQDAAVDKIAKAIRRNRVGLG
SPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADNMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYS
LILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKAEASVGFGAAREGCTNSVMGELSNYFSP
EFMNRFDGIIEFQALSKEHLLQIVDLMLTDVNSRLAYNNIHLDVTDKVKEKLVDLGYDAKMGARPLRRTIQDHIEDAITD
YYLENPTEKNLKAMLSSNGNIVIKSAKKLDKAQSVSQQKD

Nucleotide


Download         Length: 2283 bp        

>NTDB_id=1128475 FQT45_RS02765 WP_077322040.1 531944..534226(-) (clpE) [Streptococcus pseudoporcinus strain NCTC10228]
ATGCTTTGTCAAAACTGTAAATTAAATGAAGCCTCTATTCACCTATACGCTAACGTGAATGGGACACAAAAGCAGATTGA
TCTTTGTCAAAACTGTTATCAAATTATGAAGACTGACGCAAATAACTCGATTCTGGGTGGGATGCGTTCGAAATCCCAAA
ATCAAAATGATTCTTTGAATCCTTTATTTGACGATTTCTTTGGGGACCTCAACAACTTCAGAGCTTTTGGGGACTTGCCA
AATACACCCCCAACTCAGACTGGTAGACAAAATGGTGGAGGATCCGGCGGAGGCAACAACCGTAACGGCCAAGGAGCAGT
GCCTGGGCAAAATACTAAAAGAGAACCCGGTCTCCTTGAAGAGTTTGGTATTAACGTGACCGATATAGCAAGAAATGGTG
ATATTGATCCTGTCATTGGTCGCGATGAGGAAATCATTCGTGTCATTGAGATTTTAAATCGACGAACCAAGAATAATCCT
GTCTTAATTGGTGAACCAGGTGTCGGTAAAACGGCAGTCGTAGAAGGTTTAGCCCAAAAAATCGTCGATGGTAGTGTTCC
TCATAAACTGCAACATAAAGAGGTGATTCGTTTGGACGTGGTTAATCTCGTTCAGGGGACTGGTATTCGCGGACAATTTG
AAGAACGTATGCAAAAATTGATGGAAGAAATTCGTAATCGTCAAGATGTTATTCTCTTCATTGATGAGATTCATGAAATT
GTGGGTGCCGGTACTGCTGGGGATGGCAATATGGACGCTGGAAATATCTTAAAACCAGCCTTAGCTCGTGGGGAATTACA
GCTGGTTGGTGCAACAACACTCAACGAATACCGGATCATTGAAAAAGATGCTGCCTTAGAGCGTCGGATGCAACCTGTTA
AGGTCGATGAGCCTTCTGTGGAAGAAACCATTACTATTCTTAAAGGTATTCAAGCCAAATACGAAGATTATCATCATGTT
AAATACAGCCAAGATGCTATCGAAGCAGCTGCTAACTTATCGAATCGTTATATTCAAGATCGATTCTTACCGGATAAAGC
TATTGACTTGCTTGATGAAGCTGGATCAAAGCTGAATTTAACGCTTAATTTTGTTGACCCTAAAGAAATTGATAAACGAT
TAGTGGAAGCTGAAAATTTAAAAGCGCAAGCCACTCGTGATGAAGACTTTGAACGCGCAGCCTATTTCCGCGATCAAATT
GCTAAATACAAGGAGCTCCAAACTCAGAAGGTAGATGATCAAGATACTCCTATTATTACTGAAAAGACTATTGAAGCAAT
TGTTGAGCAAAAAACCAATATTCCTGTTGGTGATCTCAAAGAAAAAGAGCAATCTCAGTTAGTCAATCTTTCAGATGACT
TGAAGGCTCACGTAATTGGTCAAGATGCTGCTGTTGATAAAATTGCTAAGGCTATTCGTCGCAATCGTGTTGGTTTAGGT
AGCCCAAATCGACCAATTGGATCTTTCCTCTTTGTGGGCCCGACTGGGGTAGGGAAAACGGAACTCTCTAAACAATTAGC
TATTGAACTCTTCGGTTCAGCTGATAATATGATTCGTTTTGATATGTCTGAATATATGGAAAAGCACGCTGTTGCTAAGT
TAGTGGGAGCCCCTCCAGGATATGTCGGTTATGAAGAAGCCGGTCAATTAACAGAAAAAGTTAGACGAAATCCTTATTCA
CTGATATTATTGGACGAAGTTGAAAAAGCTCATCCTGACGTTATGCATATGTTCCTTCAAGTTTTAGATGATGGTCGGCT
AACTGATGGACAAGGGCGGACAGTCAGCTTTAAAGATACTATTATTATCATGACATCAAATGCAGGTACTGGCAAAGCTG
AAGCCTCCGTTGGTTTTGGGGCTGCACGCGAAGGATGTACCAATTCTGTTATGGGAGAATTAAGCAATTACTTTAGCCCA
GAATTTATGAATCGTTTTGATGGCATTATTGAGTTCCAAGCATTAAGCAAAGAACATTTATTACAGATTGTTGATTTAAT
GTTGACTGATGTCAATAGCCGTTTAGCCTATAACAATATTCACCTTGACGTCACAGACAAGGTGAAGGAAAAATTAGTTG
ATCTCGGCTATGACGCTAAGATGGGGGCCCGTCCACTTAGAAGAACGATTCAAGATCATATCGAAGATGCCATTACAGAC
TATTATCTTGAAAATCCAACTGAGAAGAACTTAAAGGCCATGTTGTCAAGTAATGGTAATATAGTGATTAAAAGCGCCAA
AAAACTCGATAAAGCGCAATCTGTTTCTCAGCAAAAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4U9XIG9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

84.574

98.947

0.837

  clpE Streptococcus pneumoniae Rx1

82.493

99.211

0.818

  clpE Streptococcus pneumoniae D39

82.493

99.211

0.818

  clpE Streptococcus pneumoniae R6

82.493

99.211

0.818

  clpE Streptococcus pneumoniae TIGR4

82.361

99.211

0.817

  clpC Lactococcus lactis subsp. cremoris KW2

76.087

96.842

0.737

  clpC Bacillus subtilis subsp. subtilis str. 168

51.642

88.158

0.455

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.687

82.5

0.393

  clpC Streptococcus pneumoniae Rx1

48.377

81.053

0.392

  clpC Streptococcus pneumoniae D39

48.377

81.053

0.392

  clpC Streptococcus pneumoniae TIGR4

48.214

81.053

0.391

  clpC Streptococcus thermophilus LMD-9

46.4

82.237

0.382

  clpC Streptococcus thermophilus LMG 18311

46.08

82.237

0.379

  clpC Streptococcus mutans UA159

46.829

80.921

0.379


Multiple sequence alignment