Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FQU09_RS18680 Genome accession   NZ_LR595855
Coordinates   3822861..3823460 (-) Length   199 a.a.
NCBI ID   WP_115193221.1    Uniprot ID   A0A6D1S8J8
Organism   Raoultella terrigena strain NCTC9189     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3817861..3828460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQU09_RS18665 (NCTC9189_03697) helD 3818071..3820125 (-) 2055 WP_143967477.1 DNA helicase IV -
  FQU09_RS18670 (NCTC9189_03698) - 3820248..3820694 (+) 447 WP_041144834.1 YccF domain-containing protein -
  FQU09_RS18675 (NCTC9189_03699) yccS 3820712..3822847 (+) 2136 WP_143967478.1 YccS family putative transporter -
  FQU09_RS18680 (NCTC9189_03700) sxy/tfoX 3822861..3823460 (-) 600 WP_115193221.1 TfoX/Sxy family DNA transformation protein Regulator
  FQU09_RS18685 (NCTC9189_03701) sulA 3823926..3824435 (+) 510 WP_041144831.1 SOS-induced cell division inhibitor SulA -
  FQU09_RS18690 (NCTC9189_03702) ompA 3824788..3825858 (+) 1071 WP_041147567.1 porin OmpA -
  FQU09_RS18695 (NCTC9189_03703) matP 3825962..3826414 (-) 453 WP_041144830.1 macrodomain Ter protein MatP -
  FQU09_RS18700 (NCTC9189_03704) - 3826600..3828357 (+) 1758 WP_041144829.1 Lon protease family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22693.61 Da        Isoelectric Point: 10.1929

>NTDB_id=1128390 FQU09_RS18680 WP_115193221.1 3822861..3823460(-) (sxy/tfoX) [Raoultella terrigena strain NCTC9189]
MKKISSLRFHKFQKCLSPLGKIICRPLFGGYSLAIDNTVFAMVAEGEIYLKICEQGAAYCVAHENPLLKMRKNGRPILLK
YYQINETLWCDSKMLFKLSSFSLQAAQKEKNQQRYSGRLKDLPNISFHMELLLINSGVIDQQALRHIGAQRAWLKLRESN
KAVTLNILYSLEGAITGVHAAALPTARRQELQEWALNQR

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1128390 FQU09_RS18680 WP_115193221.1 3822861..3823460(-) (sxy/tfoX) [Raoultella terrigena strain NCTC9189]
ATGAAAAAAATATCATCCCTACGGTTTCATAAATTTCAGAAGTGCTTGTCGCCATTAGGAAAAATAATCTGCCGTCCTTT
GTTTGGTGGCTATAGCCTGGCAATAGACAACACCGTATTTGCGATGGTTGCAGAGGGGGAGATCTATCTTAAGATTTGTG
AGCAGGGCGCCGCATATTGCGTTGCTCATGAAAATCCGCTTTTAAAAATGCGAAAAAACGGGCGGCCAATATTGCTTAAA
TATTATCAGATAAATGAAACGCTTTGGTGTGACAGTAAAATGCTTTTCAAACTATCGTCGTTTTCATTACAGGCGGCGCA
AAAAGAAAAGAACCAGCAGCGTTATTCCGGCAGGTTGAAAGATCTGCCAAATATTAGTTTTCATATGGAGCTACTATTAA
TTAACTCAGGGGTAATAGATCAGCAGGCGCTGCGTCATATTGGTGCACAGCGTGCGTGGCTAAAGCTGCGAGAGTCGAAT
AAGGCCGTCACGCTGAATATTCTCTATTCACTGGAAGGGGCAATTACCGGCGTTCACGCCGCTGCGCTCCCGACGGCACG
GCGTCAGGAGCTGCAGGAGTGGGCGCTTAACCAGCGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6D1S8J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

53.333

97.99

0.523

Multiple sequence alignment