Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   FJH52_RS10840 Genome accession   NZ_LR595848
Coordinates   2150011..2150769 (+) Length   252 a.a.
NCBI ID   WP_000410381.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4559 isolate 4559     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145011..2155769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJH52_RS10810 comE 2145608..2146360 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  FJH52_RS10815 comD/comD1 2146357..2147682 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  FJH52_RS10820 comC/comC1 2147703..2147828 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  FJH52_RS10830 rlmH 2148110..2148589 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FJH52_RS10835 htrA 2148772..2149953 (+) 1182 WP_000681598.1 S1C family serine protease Regulator
  FJH52_RS10840 spo0J 2150011..2150769 (+) 759 WP_000410381.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29255.63 Da        Isoelectric Point: 8.9980

>NTDB_id=1128375 FJH52_RS10840 WP_000410381.1 2150011..2150769(+) (spo0J) [Streptococcus pneumoniae strain 4559 isolate 4559]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNYFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIIYFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1128375 FJH52_RS10840 WP_000410381.1 2150011..2150769(+) (spo0J) [Streptococcus pneumoniae strain 4559 isolate 4559]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATTATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTATTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment