Detailed information NTG1128315

Bioinformatically predicted

Overview

• Name: HI0659
• Type: Machinery gene
• Locus tag: FJH52_RS02860
• Genome accession: NZ_LR595848
• Coordinates: 560686..560952 (+)
• Length: 88 a.a.
• NCBI ID: WP_001852152.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 4559 isolate 4559
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	560113..560607	560686..560952	flank	79

Gene organization within MGE regions

Location: 560113..560952

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJH52_RS02855	-	560113..560601 (+)	489	Protein_575	transposase	-
FJH52_RS02860	HI0659	560686..560952 (+)	267	WP_001852152.1	helix-turn-helix domain-containing protein	Machinery gene

Sequence

Protein

• Length: 88 a.a.
• Molecular weight: 9558.11 Da
• Isoelectric Point: 4.8274

>NTDB_id=1128315 FJH52_RS02860 WP_001852152.1 560686..560952(+) (HI0659) [Streptococcus pneumoniae strain 4559 isolate 4559]
MEGCPSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide

• Length: 267 bp

>NTDB_id=1128315 FJH52_RS02860 WP_001852152.1 560686..560952(+) (HI0659) [Streptococcus pneumoniae strain 4559 isolate 4559]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterproScan.

• Helix-turn-helix (HTH_3) (28-79)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
HI0659	Haemophilus influenzae Rd KW20	62.338	87.5	0.545