Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   E5CHR_RS26455 Genome accession   NZ_LR594675
Coordinates   5535827..5536225 (-) Length   132 a.a.
NCBI ID   WP_068683500.1    Uniprot ID   A0A2J7VR93
Organism   Variovorax sp. PBS-H4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5530827..5541225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5CHR_RS26440 (H4CHR_05273) - 5532524..5534863 (-) 2340 WP_162582656.1 methyl-accepting chemotaxis protein -
  E5CHR_RS26445 (H4CHR_05274) - 5534905..5535432 (-) 528 WP_162582658.1 chemotaxis protein CheW -
  E5CHR_RS26450 (H4CHR_05275) - 5535462..5535827 (-) 366 WP_068683498.1 response regulator -
  E5CHR_RS26455 (H4CHR_05276) pilG 5535827..5536225 (-) 399 WP_068683500.1 response regulator Regulator
  E5CHR_RS26460 (WDLP6_RS26450) - 5536303..5536473 (-) 171 WP_162582660.1 rubredoxin -
  E5CHR_RS26465 (H4CHR_05277) - 5536583..5537542 (+) 960 WP_162582662.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E5CHR_RS26470 (H4CHR_05278) hemL 5537590..5538876 (+) 1287 WP_162582664.1 glutamate-1-semialdehyde 2,1-aminomutase -
  E5CHR_RS26475 (H4CHR_05279) purH 5538921..5540498 (-) 1578 WP_162582666.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  E5CHR_RS26480 (H4CHR_05280) - 5540504..5540740 (-) 237 WP_068683508.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14644.76 Da        Isoelectric Point: 7.3215

>NTDB_id=1128252 E5CHR_RS26455 WP_068683500.1 5535827..5536225(-) (pilG) [Variovorax sp. PBS-H4]
MSSNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
SVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGVVSQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1128252 E5CHR_RS26455 WP_068683500.1 5535827..5536225(-) (pilG) [Variovorax sp. PBS-H4]
ATGAGCTCGAATGGATCCGGTTACAAGGTTCTCGTCATCGACGACAGCAACACCATCCGTCGCAGTGCCGAAATTTTTCT
CAAGCAAGGTGGCCATGAAGTGCTGCTGGCGGAGGATGGTTTCGATGCGCTGTCGAAGGTGAACGACCACAAGCCGCACC
TGATTTTCTGCGACATTCTCATGCCGCGCCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCCACTTTTCC
AGTGTGCCGGTCGTGATGCTGTCTTCCAAGGACGGAGTATTCGACAAGGCCCGCGGCCGCATGGTCGGCTCCCAGGACTA
CCTTACCAAACCCTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTCGGCGTCGTTTCGCAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J7VR93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.404

86.364

0.53

Multiple sequence alignment