Detailed information NTG1128233

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: WDLP6_RS21805
• Genome accession: NZ_LR594671
• Coordinates: 4472031..4473203 (+)
• Length: 390 a.a.
• NCBI ID: WP_162594033.1
• Uniprot ID: A0A6P2FAP4
• Organism: Variovorax sp. PBL-E5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4467031..4478203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDLP6_RS21780 (E5CHR_04346)	pxpB	4467283..4467936 (-)	654	WP_162595201.1	5-oxoprolinase subunit PxpB	-
WDLP6_RS21785 (E5CHR_04347)	coaD	4467939..4468442 (-)	504	WP_162569268.1	pantetheine-phosphate adenylyltransferase	-
WDLP6_RS21790 (E5CHR_04348)	rsmD	4468488..4469087 (-)	600	WP_232077513.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
WDLP6_RS21795 (E5CHR_04349)	-	4469180..4470529 (-)	1350	WP_162594031.1	pitrilysin family protein	-
WDLP6_RS21800 (E5CHR_04350)	-	4470544..4472001 (-)	1458	WP_162594032.1	pitrilysin family protein	-
WDLP6_RS21805 (E5CHR_04351)	pilA	4472031..4473203 (+)	1173	WP_162594033.1	signal recognition particle-docking protein FtsY	Machinery gene
WDLP6_RS21810 (E5CHR_04352)	-	4473215..4473541 (-)	327	WP_162594034.1	FHA domain-containing protein	-
WDLP6_RS21815 (E5CHR_04353)	-	4473747..4474208 (+)	462	WP_162594035.1	Mpo1-like protein	-
WDLP6_RS21820 (E5CHR_04354)	rpoH	4474345..4475286 (+)	942	WP_162594036.1	RNA polymerase sigma factor RpoH	-
WDLP6_RS21825 (E5CHR_04355)	-	4475339..4475959 (-)	621	WP_162594037.1	SCO family protein	-
WDLP6_RS21830 (E5CHR_04356)	cyoE	4475967..4476872 (-)	906	WP_162594038.1	heme o synthase	-
WDLP6_RS21835 (E5CHR_04357)	-	4476869..4478059 (-)	1191	WP_162595202.1	COX15/CtaA family protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 41067.11 Da
• Isoelectric Point: 5.3406

>NTDB_id=1128233 WDLP6_RS21805 WP_162594033.1 4472031..4473203(+) (pilA) [Variovorax sp. PBL-E5]
MFSFFKKKPPAEVAATPQPEPAPAPAPTEARVEPPAPAKSVFSPSSWFGGKPAPTEPVVASPPAPAPEPEPVFVAPPAPQ
APVAAAPEPEPERSGWLGKLRTGLRKTGSTITAAFVNAQIDDALYEELEEALLMADTGVKATEHLLEDLRRRVRSNMATE
ASQVKGLLADAITDLLRPLEKALVIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLANEGASVLLAAADTFRAAAREQLLVW
ADRNTVEIVSQEGGDPAAVSFDAVNAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVNKADATAPHEVLLVIDGNTG
QNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFKAREFAQALLG

Nucleotide

• Length: 1173 bp

>NTDB_id=1128233 WDLP6_RS21805 WP_162594033.1 4472031..4473203(+) (pilA) [Variovorax sp. PBL-E5]
ATGTTCAGTTTCTTCAAGAAAAAACCCCCAGCCGAAGTTGCCGCAACGCCGCAGCCCGAGCCCGCACCGGCACCTGCGCC
GACCGAGGCTCGCGTCGAGCCGCCGGCGCCCGCCAAGTCGGTTTTTTCACCGTCCAGCTGGTTCGGGGGCAAGCCGGCAC
CGACCGAGCCGGTGGTGGCGTCGCCGCCCGCACCCGCACCCGAACCCGAACCTGTCTTTGTTGCACCGCCCGCGCCGCAG
GCGCCAGTCGCCGCTGCACCCGAGCCCGAACCCGAGCGCAGCGGCTGGCTCGGCAAGCTCAGGACCGGCCTGCGCAAGAC
CGGCAGCACCATCACCGCCGCCTTCGTCAATGCGCAGATCGACGACGCGCTGTACGAAGAGCTCGAAGAGGCGCTGCTGA
TGGCCGATACCGGGGTCAAGGCCACGGAACACCTGCTCGAAGACTTGCGGCGCCGAGTCCGAAGCAACATGGCGACCGAG
GCTTCCCAGGTGAAAGGGCTGCTCGCCGATGCGATCACGGATCTGCTGCGGCCGCTGGAAAAGGCATTGGTCATCGGCGA
GCACACGCCGACCGTGATCATGGTGGCTGGCGTCAACGGTGCCGGCAAGACCACGTCCATCGGCAAGCTCACCAAGCATC
TGGCCAACGAAGGCGCGTCGGTGCTGCTGGCCGCGGCCGATACCTTCCGCGCGGCGGCGCGCGAGCAGTTGCTGGTCTGG
GCCGATCGCAACACCGTGGAGATCGTGAGCCAGGAAGGCGGCGATCCCGCGGCAGTGAGCTTCGATGCGGTCAACGCGGG
CAAGGCGCGCGGCAAGGACGTGGTGCTGGTCGATACGGCCGGCCGGCTGCCGACCCAGCTCCATCTGATGGACGAGCTGA
AGAAGATCAAGCGCGTGGTCAACAAGGCCGACGCCACGGCGCCACATGAAGTCCTGCTGGTGATTGACGGCAATACCGGC
CAGAACGCGCTGGCGCAGGTCAGGGCCTTCGACGAGACCCTGGGCCTGACGGGCCTGGTCGTCACCAAGCTCGATGGCAC
GGCCAAGGGCGGTGTCCTGTGCGCCATCGCCCGCGAACGGCCGATCCCGGTCTATTTCATCGGCGTGGGCGAGAAGCTGG
AAGACCTCGAGACCTTCAAGGCGCGGGAGTTCGCCCAGGCGCTGCTGGGGTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (109-171)

• SRP54-type protein, GTPase domain (SRP54) (190-390)

3D structure

• AlphaFold DB: A0A6P2FAP4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.317	100	0.515