Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   WDLP6_RS07320 Genome accession   NZ_LR594671
Coordinates   1495392..1495823 (+) Length   143 a.a.
NCBI ID   WP_232076987.1    Uniprot ID   -
Organism   Variovorax sp. PBL-E5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1490392..1500823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDLP6_RS07285 (E5CHR_01458) - 1491212..1491526 (-) 315 WP_162566415.1 EthD family reductase -
  WDLP6_RS07290 (E5CHR_01459) - 1491619..1492083 (+) 465 WP_162591797.1 EVE domain-containing protein -
  WDLP6_RS35010 - 1492104..1492343 (-) 240 Protein_1453 DUF4166 domain-containing protein -
  WDLP6_RS07300 (G3W90_RS07305) - 1492693..1493082 (-) 390 WP_162591799.1 FAD-dependent monooxygenase -
  WDLP6_RS07305 (E5CHR_01461) - 1493108..1493530 (-) 423 WP_162591800.1 PaaI family thioesterase -
  WDLP6_RS07310 (E5CHR_01462) - 1493680..1494357 (+) 678 WP_162591801.1 hypothetical protein -
  WDLP6_RS07315 (E5CHR_01463) - 1494411..1494977 (+) 567 WP_162566420.1 hypothetical protein -
  WDLP6_RS35015 - 1495190..1495351 (-) 162 WP_232076986.1 hypothetical protein -
  WDLP6_RS07320 (E5CHR_01464) fimT 1495392..1495823 (+) 432 WP_232076987.1 GspH/FimT family protein Machinery gene
  WDLP6_RS07325 (E5CHR_01465) pilV 1495840..1496373 (+) 534 WP_162591802.1 type IV pilus modification protein PilV -
  WDLP6_RS07330 (E5CHR_01466) - 1496370..1497458 (+) 1089 WP_162591803.1 PilW family protein -
  WDLP6_RS07335 (E5CHR_01467) - 1497458..1497958 (+) 501 WP_162591804.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 14228.93 Da        Isoelectric Point: 7.7045

>NTDB_id=1128226 WDLP6_RS07320 WP_232076987.1 1495392..1495823(+) (fimT) [Variovorax sp. PBL-E5]
MNNRLTGLADSLVNALNYARGSALKATVPARVCPVGAPGSTACGTDWSAGWMLVSDPDGSPSLLQRSSAPVAGPALSATD
VNGHSLASVSFDSHGLASTAAHFKICDARGAAYARSVQTVATGFVQVGSTPGQAAWGGALTCP

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1128226 WDLP6_RS07320 WP_232076987.1 1495392..1495823(+) (fimT) [Variovorax sp. PBL-E5]
ATGAACAATCGTCTCACCGGACTGGCCGACAGCCTCGTCAACGCACTCAACTACGCACGCGGCTCGGCGCTGAAGGCGAC
CGTTCCGGCGCGCGTCTGCCCTGTCGGAGCACCCGGGTCCACCGCTTGCGGAACCGATTGGAGCGCAGGCTGGATGCTGG
TCAGCGATCCGGATGGTTCGCCCTCGCTGCTCCAGCGATCGAGTGCGCCCGTGGCCGGCCCCGCGCTGTCCGCCACGGAT
GTCAACGGTCATTCGCTGGCCAGCGTGAGCTTCGACTCGCACGGACTGGCCAGCACGGCCGCGCATTTCAAGATCTGCGA
CGCCCGCGGCGCTGCCTATGCGCGATCGGTGCAGACAGTTGCCACCGGCTTCGTGCAGGTGGGCTCGACACCCGGCCAGG
CGGCCTGGGGCGGCGCATTGACCTGCCCTTGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(9-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

51.724

100

0.524

Multiple sequence alignment