Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   G3W89_RS24225 Genome accession   NZ_LR594659
Coordinates   5113800..5114198 (-) Length   132 a.a.
NCBI ID   WP_068683500.1    Uniprot ID   A0A2J7VR93
Organism   Variovorax sp. PBL-H6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5108800..5119198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3W89_RS24210 (H6CHR_04827) - 5110496..5112835 (-) 2340 WP_162576547.1 methyl-accepting chemotaxis protein -
  G3W89_RS24215 (H6CHR_04828) - 5112877..5113404 (-) 528 WP_162576548.1 chemotaxis protein CheW -
  G3W89_RS24220 (H6CHR_04829) - 5113435..5113800 (-) 366 WP_162576549.1 response regulator -
  G3W89_RS24225 (H6CHR_04830) pilG 5113800..5114198 (-) 399 WP_068683500.1 response regulator Regulator
  G3W89_RS24230 (H6CHR_04831) - 5114276..5114446 (-) 171 WP_088955233.1 rubredoxin -
  G3W89_RS24235 (H6CHR_04832) - 5114556..5115515 (+) 960 WP_162576550.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  G3W89_RS24240 (H6CHR_04833) hemL 5115562..5116860 (+) 1299 WP_162576551.1 glutamate-1-semialdehyde 2,1-aminomutase -
  G3W89_RS24245 (H6CHR_04834) purH 5116889..5118466 (-) 1578 WP_162576552.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  G3W89_RS24250 (H6CHR_04835) - 5118472..5118708 (-) 237 WP_068683508.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14644.76 Da        Isoelectric Point: 7.3215

>NTDB_id=1128173 G3W89_RS24225 WP_068683500.1 5113800..5114198(-) (pilG) [Variovorax sp. PBL-H6]
MSSNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
SVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGVVSQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1128173 G3W89_RS24225 WP_068683500.1 5113800..5114198(-) (pilG) [Variovorax sp. PBL-H6]
ATGAGCTCGAATGGATCCGGTTACAAGGTTCTCGTCATCGACGATAGCAACACCATCCGGCGCAGTGCCGAAATCTTTCT
CAAGCAGGGTGGCCATGAGGTGCTCTTGGCGGAGGACGGCTTCGATGCACTGTCGAAGGTCAACGACCACAAGCCGCACC
TGATCTTCTGCGACATTCTCATGCCGCGCCTCGACGGCTACCAGACTTGCGCCATCATCAAGCGCAACGCCCACTTCTCC
AGTGTGCCGGTCGTGATGTTGTCCTCCAAGGATGGTGTATTCGACAAGGCGCGCGGCCGAATGGTCGGCTCCCAGGACTA
CCTCACCAAACCCTTTACCAAAGACCAACTGTTGCAGGCCGTGCAGCAGTTCGGCGTCGTTTCGCAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J7VR93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.404

86.364

0.53

Multiple sequence alignment