Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | G3W89_RS23485 | Genome accession | NZ_LR594659 |
| Coordinates | 4954922..4956148 (+) | Length | 408 a.a. |
| NCBI ID | WP_162576415.1 | Uniprot ID | A0A6P2FCV5 |
| Organism | Variovorax sp. PBL-H6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4949922..4961148
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3W89_RS23460 (H6CHR_04676) | pxpB | 4950017..4950673 (-) | 657 | WP_162576410.1 | 5-oxoprolinase subunit PxpB | - |
| G3W89_RS23465 (H6CHR_04677) | coaD | 4950670..4951173 (-) | 504 | WP_162576411.1 | pantetheine-phosphate adenylyltransferase | - |
| G3W89_RS23470 (H6CHR_04678) | - | 4951217..4951870 (-) | 654 | WP_162576412.1 | RsmD family RNA methyltransferase | - |
| G3W89_RS23475 (H6CHR_04679) | - | 4951991..4953415 (-) | 1425 | WP_162576413.1 | pitrilysin family protein | - |
| G3W89_RS23480 (H6CHR_04680) | - | 4953435..4954892 (-) | 1458 | WP_162576414.1 | pitrilysin family protein | - |
| G3W89_RS23485 (H6CHR_04681) | pilA | 4954922..4956148 (+) | 1227 | WP_162576415.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| G3W89_RS23490 (H6CHR_04682) | - | 4956210..4956671 (+) | 462 | WP_162576416.1 | Mpo1-like protein | - |
| G3W89_RS23495 (H6CHR_04683) | rpoH | 4956833..4957768 (+) | 936 | WP_162576417.1 | RNA polymerase sigma factor RpoH | - |
| G3W89_RS23500 (H6CHR_04684) | - | 4957871..4958479 (-) | 609 | WP_174258278.1 | SCO family protein | - |
| G3W89_RS23505 (H6CHR_04685) | cyoE | 4958488..4959393 (-) | 906 | WP_162576419.1 | heme o synthase | - |
| G3W89_RS23510 (H6CHR_04686) | - | 4959390..4960586 (-) | 1197 | WP_162576420.1 | COX15/CtaA family protein | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 42521.00 Da Isoelectric Point: 5.1741
>NTDB_id=1128172 G3W89_RS23485 WP_162576415.1 4954922..4956148(+) (pilA) [Variovorax sp. PBL-H6]
MFSFFKKKPAPDSSAPAPAPAETTAEPPAPARSLLSPSSWFGGKPAEPPAAAPSPAAPAAPEAPVSAPVPETPVPVPVPV
PVPVPVPVPVPVPVPVPALATAPAEAAPPERSGWLSKLKTGLRKTGNSITAAFVNAQIDDALYDELEEALLMADTGVKAT
EYLLDDLRRRVRSAMATEASQVKLLLAEAITDLLRPLEKDLVIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLSNEGASVL
LAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPAAVSFDAVNAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVAR
ADATAPHEVLLVIDGNTGQNALAQVRAFDEALGLTGLVITKLDGTAKGGVLCAIARERPVPVYFIGVGEKLEDLETFKAR
EFAQALMG
MFSFFKKKPAPDSSAPAPAPAETTAEPPAPARSLLSPSSWFGGKPAEPPAAAPSPAAPAAPEAPVSAPVPETPVPVPVPV
PVPVPVPVPVPVPVPVPALATAPAEAAPPERSGWLSKLKTGLRKTGNSITAAFVNAQIDDALYDELEEALLMADTGVKAT
EYLLDDLRRRVRSAMATEASQVKLLLAEAITDLLRPLEKDLVIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLSNEGASVL
LAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPAAVSFDAVNAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVAR
ADATAPHEVLLVIDGNTGQNALAQVRAFDEALGLTGLVITKLDGTAKGGVLCAIARERPVPVYFIGVGEKLEDLETFKAR
EFAQALMG
Nucleotide
Download Length: 1227 bp
>NTDB_id=1128172 G3W89_RS23485 WP_162576415.1 4954922..4956148(+) (pilA) [Variovorax sp. PBL-H6]
ATGTTCAGCTTCTTCAAAAAAAAGCCGGCCCCCGACAGCTCTGCGCCGGCGCCGGCGCCTGCCGAAACGACCGCTGAGCC
GCCGGCGCCCGCCCGCTCGTTGCTCTCGCCATCCAGCTGGTTCGGCGGCAAGCCGGCCGAGCCGCCCGCGGCTGCCCCGT
CCCCGGCCGCGCCTGCAGCACCTGAGGCACCCGTCTCTGCCCCCGTCCCCGAGACACCCGTGCCGGTGCCGGTGCCGGTG
CCAGTGCCGGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCGGCGTTGGCGACGGCGCCCGCGGAAGCCGC
GCCTCCCGAGCGCAGCGGCTGGCTCAGCAAACTCAAGACAGGTTTGCGCAAGACGGGCAACAGCATCACCGCCGCCTTCG
TCAACGCCCAGATCGATGACGCCCTCTACGACGAGCTTGAAGAGGCCCTGCTGATGGCCGACACGGGCGTGAAGGCCACG
GAATACCTGCTCGACGACCTGCGCCGGCGCGTTCGCAGCGCCATGGCGACGGAGGCCTCGCAGGTCAAGCTGCTGCTGGC
CGAGGCCATCACGGACCTGCTGCGCCCGCTCGAAAAGGACCTGGTGATCGGCGAGCACACGCCGACGGTGATCATGGTGG
CGGGTGTCAACGGCGCCGGCAAGACCACTTCGATCGGCAAGCTCACAAAGCATCTCTCCAACGAGGGCGCTTCGGTGCTG
CTGGCGGCGGCCGACACCTTCCGCGCCGCGGCGCGCGAGCAACTGCTGGTCTGGGCCGACCGCAACACGGTCGAGATCGT
GAGCCAGGAAGGGGGCGACCCGGCCGCGGTGAGCTTCGACGCGGTCAATGCCGGCAAGGCGCGAGGCAAGGACGTGGTGC
TGGTCGACACCGCCGGCCGGCTGCCGACCCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTGGTAGCACGG
GCGGACGCCACCGCGCCGCACGAGGTGCTGCTCGTGATCGACGGCAATACGGGGCAGAACGCCCTGGCGCAGGTGCGTGC
CTTCGACGAAGCGCTGGGTTTGACCGGCCTGGTCATCACCAAGCTGGACGGCACGGCCAAGGGTGGGGTGCTGTGCGCGA
TCGCGCGCGAGCGGCCGGTTCCGGTGTACTTCATCGGGGTTGGCGAGAAGCTCGAAGACCTCGAGACCTTCAAGGCCCGG
GAGTTCGCCCAGGCGCTGATGGGGTAG
ATGTTCAGCTTCTTCAAAAAAAAGCCGGCCCCCGACAGCTCTGCGCCGGCGCCGGCGCCTGCCGAAACGACCGCTGAGCC
GCCGGCGCCCGCCCGCTCGTTGCTCTCGCCATCCAGCTGGTTCGGCGGCAAGCCGGCCGAGCCGCCCGCGGCTGCCCCGT
CCCCGGCCGCGCCTGCAGCACCTGAGGCACCCGTCTCTGCCCCCGTCCCCGAGACACCCGTGCCGGTGCCGGTGCCGGTG
CCAGTGCCGGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCGGCGTTGGCGACGGCGCCCGCGGAAGCCGC
GCCTCCCGAGCGCAGCGGCTGGCTCAGCAAACTCAAGACAGGTTTGCGCAAGACGGGCAACAGCATCACCGCCGCCTTCG
TCAACGCCCAGATCGATGACGCCCTCTACGACGAGCTTGAAGAGGCCCTGCTGATGGCCGACACGGGCGTGAAGGCCACG
GAATACCTGCTCGACGACCTGCGCCGGCGCGTTCGCAGCGCCATGGCGACGGAGGCCTCGCAGGTCAAGCTGCTGCTGGC
CGAGGCCATCACGGACCTGCTGCGCCCGCTCGAAAAGGACCTGGTGATCGGCGAGCACACGCCGACGGTGATCATGGTGG
CGGGTGTCAACGGCGCCGGCAAGACCACTTCGATCGGCAAGCTCACAAAGCATCTCTCCAACGAGGGCGCTTCGGTGCTG
CTGGCGGCGGCCGACACCTTCCGCGCCGCGGCGCGCGAGCAACTGCTGGTCTGGGCCGACCGCAACACGGTCGAGATCGT
GAGCCAGGAAGGGGGCGACCCGGCCGCGGTGAGCTTCGACGCGGTCAATGCCGGCAAGGCGCGAGGCAAGGACGTGGTGC
TGGTCGACACCGCCGGCCGGCTGCCGACCCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTGGTAGCACGG
GCGGACGCCACCGCGCCGCACGAGGTGCTGCTCGTGATCGACGGCAATACGGGGCAGAACGCCCTGGCGCAGGTGCGTGC
CTTCGACGAAGCGCTGGGTTTGACCGGCCTGGTCATCACCAAGCTGGACGGCACGGCCAAGGGTGGGGTGCTGTGCGCGA
TCGCGCGCGAGCGGCCGGTTCCGGTGTACTTCATCGGGGTTGGCGAGAAGCTCGAAGACCTCGAGACCTTCAAGGCCCGG
GAGTTCGCCCAGGCGCTGATGGGGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
47.642 |
100 |
0.495 |