Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M036_RS10935 Genome accession   NZ_CP005997
Coordinates   2146937..2147557 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis TO-A     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2141937..2152557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M036_RS10895 (M036_10785) ptsA 2143068..2143574 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  M036_RS10900 (M036_10790) ypqA 2143712..2144131 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  M036_RS10905 (M036_10795) sppG 2144152..2144529 (-) 378 WP_004398696.1 YppG family protein -
  M036_RS10910 (M036_10800) yppF 2144717..2144905 (+) 189 WP_003230690.1 YppF family protein -
  M036_RS10915 (M036_10805) yppE 2144944..2145315 (-) 372 WP_003246080.1 YppE family protein -
  M036_RS10920 (M036_10810) yppD 2145361..2145606 (-) 246 WP_004398488.1 YppD family protein -
  M036_RS10925 (M036_10815) sspM 2145805..2145909 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  M036_RS10930 (M036_10820) yppC 2145934..2146896 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  M036_RS10935 (M036_10825) recU 2146937..2147557 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  M036_RS10940 (M036_10830) ponA 2147579..2150323 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  M036_RS10945 (M036_10835) ypoC 2150399..2150893 (-) 495 WP_009967579.1 YpoC family protein -
  M036_RS10950 (M036_10840) nth 2150890..2151549 (-) 660 WP_009967580.1 endonuclease III -
  M036_RS10955 (M036_10845) dnaD 2151568..2152266 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=112817 M036_RS10935 WP_004399067.1 2146937..2147557(+) (recU) [Bacillus subtilis TO-A]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=112817 M036_RS10935 WP_004399067.1 2146937..2147557(+) (recU) [Bacillus subtilis TO-A]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment