Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   FGL20_RS09650 Genome accession   NZ_LR594050
Coordinates   1953691..1954464 (+) Length   257 a.a.
NCBI ID   WP_093959049.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10925     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1948691..1959464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL20_RS09640 (NCTC10925_01941) rlmH 1951736..1952215 (-) 480 WP_039984949.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FGL20_RS09645 (NCTC10925_01942) htrA 1952412..1953614 (+) 1203 WP_003084040.1 S1C family serine protease Regulator
  FGL20_RS09650 (NCTC10925_01943) spo0J 1953691..1954464 (+) 774 WP_093959049.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29369.91 Da        Isoelectric Point: 8.7890

>NTDB_id=1128069 FGL20_RS09650 WP_093959049.1 1953691..1954464(+) (spo0J) [Streptococcus porcinus strain NCTC10925]
MTEELKEIKIEDIVANPHQPRLHFNHEELKELANSIKINGLIQPIIVRPSEIYGYELIAGERRLKASQLAGLEKVPAVIK
NISTTESMHQAIVENLQRSDLNPIEEAKAFQNILTKNQLTHEQLATFMGKSRPYITNSIRLLQLPDIILTALEEGKISTG
HARSLVTLNKSQDQENYFHRIIDQDLSVRQTEQLVKLKKQTKKQQMNKDIFIKALEEELAKSLGLTIHVKLKKDGSGQLS
CLFNNEEELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1128069 FGL20_RS09650 WP_093959049.1 1953691..1954464(+) (spo0J) [Streptococcus porcinus strain NCTC10925]
ATGACAGAAGAATTAAAAGAAATAAAAATAGAAGATATTGTTGCTAATCCACATCAACCTAGACTTCACTTTAATCATGA
AGAACTAAAAGAATTAGCAAATTCTATTAAAATAAATGGACTTATCCAACCAATTATCGTTCGACCATCCGAAATTTATG
GTTATGAATTAATTGCAGGTGAGAGACGTTTAAAAGCTTCTCAACTAGCTGGTTTAGAAAAAGTTCCAGCAGTCATTAAA
AATATTTCAACAACTGAAAGTATGCACCAAGCAATAGTTGAAAATCTTCAACGGTCCGACTTAAACCCAATTGAAGAAGC
AAAAGCTTTTCAAAATATTCTTACTAAAAACCAATTAACTCATGAACAATTAGCTACTTTTATGGGTAAATCACGTCCTT
ACATTACTAATAGTATCCGCCTTTTACAGTTACCTGATATTATTTTAACTGCACTAGAAGAGGGAAAAATTAGTACTGGG
CACGCTCGTAGTTTAGTTACTTTGAATAAGAGTCAAGATCAAGAGAATTATTTTCATCGTATTATTGACCAAGACCTCAG
CGTACGTCAGACTGAGCAGCTCGTAAAATTAAAAAAGCAAACTAAAAAACAACAGATGAATAAGGATATTTTTATTAAAG
CCCTAGAAGAAGAGCTTGCAAAATCTTTAGGTCTTACTATTCATGTTAAATTAAAAAAAGATGGTAGTGGACAACTATCT
TGCCTCTTTAATAATGAAGAAGAACTCAACAGAATTATCAACAAATTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.588

100

0.576


Multiple sequence alignment