Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGL20_RS08880 Genome accession   NZ_LR594050
Coordinates   1789486..1790853 (-) Length   455 a.a.
NCBI ID   WP_093959008.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10925     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784486..1795853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL20_RS08865 (NCTC10925_01784) - 1785332..1786678 (-) 1347 WP_003084981.1 GHKL domain-containing protein -
  FGL20_RS08870 (NCTC10925_01785) gltX 1787061..1788506 (-) 1446 WP_003085032.1 glutamate--tRNA ligase -
  FGL20_RS08875 (NCTC10925_01786) - 1788837..1789331 (-) 495 WP_003085238.1 beta-class carbonic anhydrase -
  FGL20_RS08880 (NCTC10925_01787) radA 1789486..1790853 (-) 1368 WP_093959008.1 DNA repair protein RadA Machinery gene
  FGL20_RS08885 (NCTC10925_01788) - 1790880..1791326 (-) 447 WP_003084849.1 dUTP diphosphatase -
  FGL20_RS08890 (NCTC10925_01789) - 1791446..1791805 (-) 360 WP_003084218.1 YbaN family protein -
  FGL20_RS08895 (NCTC10925_01790) - 1791986..1792588 (+) 603 WP_003084465.1 NADPH-dependent FMN reductase -
  FGL20_RS08900 (NCTC10925_01791) - 1792606..1793847 (+) 1242 WP_003085911.1 NAD(P)H-dependent oxidoreductase -
  FGL20_RS08905 (NCTC10925_01792) - 1793889..1794674 (-) 786 WP_003084247.1 epoxyqueuosine reductase QueH -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49771.02 Da        Isoelectric Point: 5.4007

>NTDB_id=1128063 FGL20_RS08880 WP_093959008.1 1789486..1790853(-) (radA) [Streptococcus porcinus strain NCTC10925]
MAKKKATFVCQECGYHSPKYLGRCPNCSAWSSFVEEVEVQELKNARVSLTGEKSRPVKLKDVDNLNYSRTQTNMDEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQEIRIEIE
KIQPDFLIIDSIQTIMSPDSSGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVTNPSQVFLEERLDGATGSAIVVAMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKAAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNALQGLDIPQNIEVVGVSTVGEVLKAVFSKT

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1128063 FGL20_RS08880 WP_093959008.1 1789486..1790853(-) (radA) [Streptococcus porcinus strain NCTC10925]
ATGGCTAAGAAAAAAGCAACCTTTGTCTGTCAGGAATGTGGTTATCACTCTCCTAAATATCTAGGACGTTGTCCCAATTG
TTCAGCCTGGTCTTCATTTGTAGAGGAAGTTGAAGTCCAAGAGCTTAAGAATGCGCGTGTTAGCCTAACGGGTGAAAAGA
GTCGTCCTGTAAAGCTGAAGGATGTTGATAATCTCAATTATTCCCGTACTCAGACTAACATGGATGAATTTAATCGAGTT
CTTGGTGGAGGAGTCGTTCCAGGCAGCCTTATCCTGATTGGTGGAGATCCGGGGATCGGGAAGTCAACCTTACTCTTGCA
AGTTTCGACTCAGCTGGCTAATAAAGGAACAGTTTTATATGTGTCTGGAGAAGAGTCGGCAGAACAGATAAAATTGCGAA
GTGAACGTCTAGGGGAGATTGATAATGAATTCTATCTCTACGCTGAGACCAACATGCAAGAGATTAGGATTGAGATTGAG
AAAATTCAACCTGATTTTTTAATTATTGATTCCATTCAAACCATTATGAGTCCTGATAGCTCAGGTGTTCAAGGGTCTGT
TAGTCAGGTTAGAGAAGTAACAGCGGAACTCATGCAATTAGCGAAGACTAATAATATTGCGACCTTTATAGTTGGGCACG
TTACTAAAGAAGGAACTATAGCAGGACCAAGAATGTTGGAGCATATGGTGGATACAGTCCTCTATTTTGAAGGTGAACGT
CATCACACCTTTAGAATTTTGAGGGCTGTTAAAAATCGTTTTGGCTCGACCAATGAAATTGGTATTTTTGAAATGCAATC
AGGTGGGCTGGTTGAGGTTACTAATCCTAGTCAAGTTTTCCTAGAGGAACGCTTAGACGGTGCCACAGGCTCAGCTATTG
TGGTTGCTATGGAAGGTAGTCGACCGATTTTAGCTGAGGTCCAATCTTTAGTAACCCCAACTGTTTTTGGTAATGCTAGG
AGGACAACAACAGGATTAGATTTCAATCGGGTTAGTTTGATTATGGCTGTTTTAGAAAAGCGTTGTGGCTTGCTGTTACA
GAATCAGGATGCCTATTTGAAGGCTGCTGGAGGTGTTAAGTTAGATGAGCCGGCCATTGACTTAGCTGTGGCTGTGGCCA
TTGCTTCAAGTTATAAGGAACTGCCAACTAATCCTCAAGAGGCCTTTCTAGGAGAAATTGGTTTGACGGGTGAGATTAGA
CGGGTGACTCGTATTGAACAAAGAATTAATGAAGCAGCTAAACTTGGATTTACCAAGATTTATGTCCCTAAAAATGCTTT
ACAAGGATTAGATATTCCTCAAAATATAGAAGTTGTTGGTGTATCAACGGTAGGAGAGGTTCTTAAAGCGGTCTTCTCTA
AAACTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(55-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

85.43

99.56

0.851
  radA Streptococcus pneumoniae D39

85.43

99.56

0.851
  radA Streptococcus pneumoniae R6

85.43

99.56

0.851
  radA Streptococcus pneumoniae TIGR4

85.43

99.56

0.851
  radA Streptococcus mitis NCTC 12261

85.43

99.56

0.851
  radA Streptococcus mitis SK321

85.43

99.56

0.851
  radA Bacillus subtilis subsp. subtilis str. 168

60.927

99.56

0.607

Multiple sequence alignment