Detailed information NTG1128061

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: FGL20_RS08635
• Genome accession: NZ_LR594050
• Coordinates: 1738793..1739728 (-)
• Length: 311 a.a.
• NCBI ID: WP_093959000.1
• Uniprot ID: A0A4V0HGC9
• Organism: Streptococcus porcinus strain NCTC10925
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1733793..1744728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL20_RS08610 (NCTC10925_01734)	tsaD	1734425..1735435 (-)	1011	WP_093958998.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
FGL20_RS08615 (NCTC10925_01735)	rimI	1735425..1735853 (-)	429	WP_003083288.1	ribosomal protein S18-alanine N-acetyltransferase	-
FGL20_RS08620 (NCTC10925_01736)	tsaB	1735853..1736545 (-)	693	WP_003083824.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
FGL20_RS08625 (NCTC10925_01737)	-	1736824..1737054 (+)	231	WP_003085221.1	DNA-dependent RNA polymerase subunit epsilon	-
FGL20_RS08630 (NCTC10925_01738)	rnjA	1737056..1738741 (+)	1686	WP_093958999.1	ribonuclease J1	-
FGL20_RS08635 (NCTC10925_01739)	amiF	1738793..1739728 (-)	936	WP_093959000.1	ABC transporter ATP-binding protein	Regulator
FGL20_RS08640 (NCTC10925_01740)	oppD	1739728..1740774 (-)	1047	WP_003083752.1	ABC transporter ATP-binding protein	Regulator
FGL20_RS08645 (NCTC10925_01741)	-	1740785..1741816 (-)	1032	WP_003085327.1	ABC transporter permease	-
FGL20_RS08650 (NCTC10925_01742)	-	1741826..1742740 (-)	915	WP_003083822.1	ABC transporter permease	-
FGL20_RS08655 (NCTC10925_01743)	-	1742812..1744470 (-)	1659	WP_003083189.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35356.30 Da
• Isoelectric Point: 6.5994

>NTDB_id=1128061 FGL20_RS08635 WP_093959000.1 1738793..1739728(-) (amiF) [Streptococcus porcinus strain NCTC10925]
MTDKRKKLVELKNVSLIFNKGKKNEVKAIDKVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGDIIFNGKTVSNL
KGKELHEFRKDAQMIFQDPQASLNSRMKIRDIVAEGLDIHKLSPNKAEREERVQELLERVGLNRDHATRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQRLQEERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTRSLLSAIPEPDPDIERQRVAEIYDPSIEMDGQERQMHEITPGHFVLSTEAEAEAYRSQQNK

Nucleotide

• Length: 936 bp

>NTDB_id=1128061 FGL20_RS08635 WP_093959000.1 1738793..1739728(-) (amiF) [Streptococcus porcinus strain NCTC10925]
ATGACAGATAAACGCAAAAAATTAGTTGAGCTTAAGAATGTTTCACTGATCTTCAATAAAGGTAAAAAGAATGAAGTTAA
AGCTATTGATAAGGTTAGCTTTGACATCTATGAAGGTGAAGTATTTGGGCTTGTCGGAGAATCTGGATCAGGAAAAACGA
CAGTTGGCCGTGCTATTTTGAAGCTTTATGATATCAATGAAGGTGATATTATATTTAATGGTAAAACAGTTTCCAATCTT
AAAGGAAAAGAGTTGCATGAGTTCCGTAAAGATGCTCAGATGATTTTCCAAGATCCACAAGCAAGCCTTAATAGTCGGAT
GAAAATTAGAGACATTGTTGCAGAAGGGTTAGATATTCATAAACTTTCACCAAACAAAGCAGAGCGTGAGGAACGGGTTC
AAGAATTACTAGAACGTGTTGGTTTGAACCGAGACCACGCAACGCGTTATCCTCATGAATTTTCTGGTGGCCAACGTCAA
CGAATTGGTATTGCTCGAGCGCTGGCTGTCAAACCGAAATTTATTATTGCCGATGAGCCTATCTCTGCTCTTGATGTATC
TATTCAAGCACAGGTTGTTAACTTAATGCAAAGGTTACAAGAAGAAAGAGGATTGACTTATCTCTTTATTGCACATGATT
TGTCGATGGTTAAATATATTTCTGATCGTATTGGTGTTATGCATTGGGGTAAAATGTTAGAGATTGGTACGTCTGATGAT
GTTTATAATAACCCTATCCATCCCTACACTAGGAGTCTCCTCTCTGCTATCCCAGAACCAGATCCAGATATTGAGCGCCA
ACGTGTTGCTGAAATCTACGATCCAAGTATCGAAATGGATGGACAAGAACGCCAAATGCATGAAATTACGCCAGGTCATT
TTGTTTTATCGACCGAAGCAGAAGCAGAAGCTTATAGATCTCAACAAAATAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

3D structure

• AlphaFold DB: A0A4V0HGC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.247	99.035	0.527
amiF	Streptococcus thermophilus LMG 18311	52.922	99.035	0.524
amiF	Streptococcus salivarius strain HSISS4	52.597	99.035	0.521