Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FGL23_RS08150 Genome accession   NZ_LR594049
Coordinates   1700669..1701379 (+) Length   236 a.a.
NCBI ID   WP_061603101.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695669..1706379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS08140 (NCTC10231_01622) treC 1696719..1698344 (-) 1626 WP_061603103.1 alpha,alpha-phosphotrehalase -
  FGL23_RS08145 (NCTC10231_01623) treP 1698480..1700489 (-) 2010 WP_061603102.1 PTS system trehalose-specific EIIBC component -
  FGL23_RS08150 (NCTC10231_01624) treR 1700669..1701379 (+) 711 WP_061603101.1 trehalose operon repressor Regulator
  FGL23_RS08155 (NCTC10231_01625) - 1701665..1702273 (-) 609 WP_061603100.1 hypothetical protein -
  FGL23_RS08160 (NCTC10231_01626) - 1702430..1703770 (-) 1341 WP_061603099.1 hemolysin family protein -
  FGL23_RS08165 (NCTC10231_01627) - 1703862..1705508 (-) 1647 WP_061603098.1 phosphoenolpyruvate carboxykinase (ATP) -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27706.83 Da        Isoelectric Point: 9.0001

>NTDB_id=1127977 FGL23_RS08150 WP_061603101.1 1700669..1701379(+) (treR) [Streptococcus gordonii strain NCTC10231]
MKKYQQLFKLIEQDILSEKYPVGEFLPSENELTQIYKVSRDTVRKALEQLQKEGLIQKFKGQGSKIIKQEHINFPISNLT
SYQELVLQNKLDSKTNVISLEKITVDKKLAKLTGFPEYHLVWRIIRQRVVDQVASVLDIDYLDKELVPTMTREIAEHSIY
HFIENDLGLSIDYAKKEITIDHATSRDKILLDIERENHVVSVKSQVYLANGQQFQFTDSRHKLDKFRFVDFAKRHN

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1127977 FGL23_RS08150 WP_061603101.1 1700669..1701379(+) (treR) [Streptococcus gordonii strain NCTC10231]
ATGAAGAAATACCAACAATTATTCAAACTAATCGAGCAAGATATCCTGAGCGAGAAATACCCCGTTGGCGAATTTTTACC
TAGCGAGAATGAATTAACTCAGATTTATAAAGTCAGCCGTGATACTGTCCGAAAGGCTCTTGAGCAACTTCAAAAAGAAG
GATTAATCCAAAAATTCAAGGGACAAGGATCCAAAATCATCAAACAGGAACACATCAATTTCCCAATCTCCAATCTGACT
AGCTACCAGGAACTCGTCCTACAAAATAAACTAGATTCTAAAACCAATGTCATCAGCCTAGAAAAAATAACTGTAGATAA
AAAACTTGCCAAGCTAACTGGTTTCCCAGAATATCACTTGGTTTGGCGAATCATTCGACAAAGAGTTGTTGATCAGGTTG
CTTCTGTCCTTGATATTGATTATTTGGATAAAGAGCTTGTTCCTACGATGACGAGAGAAATTGCAGAGCATTCTATCTAT
CATTTCATTGAAAATGATCTTGGACTTAGCATCGACTATGCTAAAAAGGAAATCACCATTGACCATGCGACCAGTCGAGA
TAAAATTTTGCTCGATATTGAGAGAGAAAACCATGTCGTTTCCGTCAAATCTCAGGTTTATTTAGCGAACGGGCAGCAAT
TTCAGTTTACAGACAGTAGGCACAAACTTGATAAATTCCGCTTTGTTGATTTTGCCAAAAGGCACAACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-65)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

65.106

99.576

0.648

Multiple sequence alignment