Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL23_RS07745 Genome accession   NZ_LR594049
Coordinates   1610423..1612225 (-) Length   600 a.a.
NCBI ID   WP_060970215.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605423..1617225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS07730 (NCTC10231_01539) - 1607889..1608374 (-) 486 WP_061603146.1 LURP-one-related/scramblase family protein -
  FGL23_RS07735 (NCTC10231_01541) prsA 1608603..1609532 (-) 930 WP_061603145.1 peptidylprolyl isomerase PrsA -
  FGL23_RS07740 (NCTC10231_01542) - 1609735..1610421 (-) 687 WP_061603144.1 O-methyltransferase -
  FGL23_RS07745 (NCTC10231_01543) pepF 1610423..1612225 (-) 1803 WP_060970215.1 oligoendopeptidase F Regulator
  FGL23_RS07750 (NCTC10231_01544) - 1612382..1612690 (-) 309 WP_061603143.1 hypothetical protein -
  FGL23_RS07755 (NCTC10231_01545) - 1612737..1613129 (-) 393 WP_231092506.1 hypothetical protein -
  FGL23_RS07760 (NCTC10231_01546) - 1613108..1614742 (-) 1635 WP_061603142.1 DUF2974 domain-containing protein -
  FGL23_RS07765 (NCTC10231_01547) - 1614752..1615147 (-) 396 WP_061603141.1 DUF1310 family protein -
  FGL23_RS10860 (NCTC10231_01548) - 1615325..1615456 (-) 132 WP_269139793.1 hypothetical protein -
  FGL23_RS07770 (NCTC10231_01549) - 1615458..1615844 (-) 387 WP_061603140.1 DUF1310 family protein -
  FGL23_RS07775 (NCTC10231_01550) - 1616047..1616451 (-) 405 WP_061603139.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69384.39 Da        Isoelectric Point: 4.4968

>NTDB_id=1127972 FGL23_RS07745 WP_060970215.1 1610423..1612225(-) (pepF) [Streptococcus gordonii strain NCTC10231]
MAKQRNEIEEKYTWDLSTIFPTDEAFETELAQVSEELKNASNLAGHLLDSAESLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTIYSEFGQTFAFYEPEFMEITEDQYQAFLAEKPELQTYQHYFDKLLQKKEHILTQREEELLAGA
GEIFGAASETFAILDNADIVFPVVHNEKGEEVQLTHGNYISLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVQ
NYNAKVRKFSSAREAALSANFIPESVYDSLVSAVDKHLPLLQRYIALRAKILGISDLKMYDLYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQFEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1127972 FGL23_RS07745 WP_060970215.1 1610423..1612225(-) (pepF) [Streptococcus gordonii strain NCTC10231]
ATGGCTAAACAAAGAAATGAAATTGAAGAAAAATATACATGGGATTTAAGTACGATTTTCCCTACAGATGAAGCCTTTGA
GACTGAACTTGCACAGGTTTCTGAAGAATTAAAAAATGCAAGCAATCTAGCAGGGCATCTGCTGGATTCGGCAGAAAGCC
TTTTGACAACAACGGAAATTCAATTAGACTTGATGCGTCGTATTGAGAAACTTTATTCCTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTAGCAAAATATCAGGAATACCAAGCTAAAGGAATGACTATTTACAGTGAGTTCGGCCAGACTTTTGC
TTTCTATGAGCCAGAATTCATGGAAATTACAGAAGACCAATACCAAGCTTTTTTGGCTGAAAAACCTGAACTACAAACCT
ATCAACATTATTTTGATAAGCTCTTGCAGAAGAAGGAACACATCCTGACCCAGCGTGAAGAGGAGTTGTTGGCTGGTGCT
GGAGAAATCTTTGGTGCTGCCAGTGAAACCTTTGCTATTTTGGACAATGCGGATATCGTCTTTCCAGTAGTTCACAATGA
AAAGGGCGAAGAAGTCCAGTTGACACATGGGAACTATATTTCTCTAGTAGAGTCTAAAAATCGAGAAGTTCGTAAGGAAG
CTTATGAAGCTCTTTATAGTGTATATGAGCAGTATCAGCATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTTCAA
AATTACAACGCTAAAGTCCGCAAGTTCTCATCTGCCCGTGAGGCCGCTTTATCGGCTAACTTTATCCCGGAAAGTGTCTA
TGATAGCTTGGTTTCTGCTGTAGACAAACACCTTCCTCTGTTACAACGTTATATTGCCTTGCGAGCAAAGATTTTGGGTA
TTTCTGATTTGAAGATGTACGATTTGTACACACCTTTGTCAGAAACAGACTACAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCAATTTTGGGTGAGGATTATTTGAGTCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTTATGAAAATCAAGGTAAGCGCTCAGGAGCATACTCAGGTGGCTCTTATGATACCAATGCCTTTATGTTGCTCAACT
GGCAGGATACGCTGGACAATCTCTTTACCTTGGTGCACGAGACAGGCCACAGTATGCACTCAAGCTATACTCGTGAGACC
CAGCCTTATGTTTACGGAGACTATTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCCTGACAGAGAA
GCTCTTGGAAGAAGTAGAAGACGATGCTACTCGCTTTGCGATTCTTAATCACTTTTTGGATGGCTTTAGAGGAACGGTCT
TCCGTCAAACTCAGTTTGCTGAATTTGAGCATGCTATCCACAAGGCTGACCAAGAAGGACAAGTGTTGACTAGCGAGTTT
CTCAATGAGCTATATGCAGACTTAAATGAGAAATACTACGGCTTGAAAAAAGAAGACAATCCGCAGATTCAGTTCGAATG
GGCACGGATTCCTCACTTCTACTATAATTATTATGTTTTTCAATACTCTACAGGATTTGCAGCTGCTTCGGCCTTGGCCG
AAAAGATTGTCCATGGTAGCCAAGAAGACAAGGACAAATATCTGGACTATCTCAAAGCTGGGAACTCTGACTATCCGCTC
AATGTCATCAAAAAAGCAGGTGTGGATATGGAAAAAGAAGACTATCTAAATGCAGCCTTTGCAGTCTTCGAACGCCGCTT
GGATGAATTTGAAGCTTTGGTAGAAAAGTTGGGATTAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.624

99.333

0.682

Multiple sequence alignment