Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGL23_RS00785 Genome accession   NZ_LR594049
Coordinates   168235..169596 (+) Length   453 a.a.
NCBI ID   WP_081106383.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 163235..174596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS00745 (NCTC10231_00148) - 163341..165110 (+) 1770 WP_061603977.1 ABC transporter ATP-binding protein -
  FGL23_RS00750 (NCTC10231_00149) - 165289..165978 (+) 690 WP_045634457.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  FGL23_RS00760 (NCTC10231_00150) - 166243..166698 (+) 456 WP_061598609.1 8-oxo-dGTP diphosphatase -
  FGL23_RS00770 (NCTC10231_00151) - 166784..167227 (+) 444 WP_061603976.1 dUTP diphosphatase -
  FGL23_RS00775 (NCTC10231_00152) - 167237..167695 (+) 459 WP_061603975.1 isochorismatase family cysteine hydrolase -
  FGL23_RS00780 (NCTC10231_00153) - 167714..168222 (+) 509 Protein_151 histidine phosphatase family protein -
  FGL23_RS00785 (NCTC10231_00154) radA 168235..169596 (+) 1362 WP_081106383.1 DNA repair protein RadA Machinery gene
  FGL23_RS00790 (NCTC10231_00155) - 169709..170419 (+) 711 WP_061603973.1 TIGR00266 family protein -
  FGL23_RS00795 (NCTC10231_00156) - 170499..170984 (+) 486 WP_000156417.1 GNAT family N-acetyltransferase -
  FGL23_RS10760 - 171133..171252 (+) 120 Protein_155 TIGR00266 family protein -
  FGL23_RS00805 (NCTC10231_00157) - 171389..171883 (+) 495 WP_008808198.1 beta-class carbonic anhydrase -
  FGL23_RS00810 (NCTC10231_00158) gltX 172033..173490 (+) 1458 WP_048776309.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49501.80 Da        Isoelectric Point: 5.7873

>NTDB_id=1127947 FGL23_RS00785 WP_081106383.1 168235..169596(+) (radA) [Streptococcus gordonii strain NCTC10231]
MAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRAEIE
KIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIR
RVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1127947 FGL23_RS00785 WP_081106383.1 168235..169596(+) (radA) [Streptococcus gordonii strain NCTC10231]
ATCGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCCAAGTATCTAGGTCGCTGTCCCAACTG
CGGAGCTTGGTCTTCTTTTGTTGAGGAAGTAGAGGCTGCAGAAGTCAAGCATGCCCGTGTTTCCTTGACGGGGGAAAAGA
CCCGACCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAACCGGACTAAGACAGAAATGGACGAGTTCAATCGTGTG
CTGGGTGGTGGCGTAGTGCCTGGCAGTCTGGTCCTGATTGGCGGGGATCCCGGTATCGGGAAGTCCACCTTGCTTCTGCA
GGTATCCACCCAGCTTTCTCATCAGGGCACCGTCCTTTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGCTTCGGG
CGGAACGCCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAATATCCGTGCAGAGATTGAG
AAAATTAAGCCAGATTTTCTGATTATCGACTCCATTCAGACGGTTATGTCGCCGGAAATTTCCAGTGTTCAAGGCTCTGT
CTCTCAGGTCCGAGAGGTGACAGCTGAGCTTATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATCGTTGGTCACA
TGACCAAGGAAGGAACCTTAGCTGGTCCTCGAACTTTAGAGCACATGGTGGACACCGTGCTTTATTTTGAGGGCGAACGT
CAGCACACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGCTCTACTAATGAGATTGGTATCTTCGAAATGCAGTC
TGGTGGGCTAGTTGAGGTTGTCAACCCCAGTGAAGTCTTTCTAGAAGAACGTCTGGACGGCGCGACAGGCTCTTCAATCG
TTGTAACCATGGAAGGGACGCGGCCGATTTTGGCAGAGGTGCAGGCTTTGGTGACACCGACCATGTTCGGCAATGCCAAG
CGAACCACGACCGGACTGGACTTTAACAGAGCCAGCCTCATCATGGCGGTTCTGGAAAAGCGGGCAGGACTCCTCCTGCA
AAATCAAGATGCCTATCTCAAATCAGCTGGCGGCGTCAAGCTAGATGAGCCAGCGATTGATTTGGCAGTAGCAGTAGCCA
TTGCTTCCAGCTACAAGGATTTGCCTACAAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGTGAAATCCGT
CGAGTCAATCGCATCGAACAGCGCATCAATGAAGCAGCAAAACTGGGCTTTACCAAAGTCTACGCTCCAAAAAACTCTCT
GAACGGCCTCAAAGTTCCGGACAATATCCAAGTCATTGGTGTGACGACGATTGGGGAAGTCTTAAAGAAAGTATTTTCTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

91.611

100

0.916
  radA Streptococcus pneumoniae D39

91.611

100

0.916
  radA Streptococcus pneumoniae R6

91.611

100

0.916
  radA Streptococcus pneumoniae TIGR4

91.611

100

0.916
  radA Streptococcus mitis SK321

91.611

100

0.916
  radA Streptococcus mitis NCTC 12261

91.391

100

0.914
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629

Multiple sequence alignment