Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FGL18_RS10020 Genome accession   NZ_LR594046
Coordinates   2082264..2082977 (+) Length   237 a.a.
NCBI ID   WP_138126774.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2077264..2087977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS10010 (NCTC6403_02057) treC 2078334..2079962 (-) 1629 WP_138126770.1 alpha,alpha-phosphotrehalase -
  FGL18_RS10015 (NCTC6403_02058) treP 2080029..2082053 (-) 2025 WP_138126772.1 PTS system trehalose-specific EIIBC component -
  FGL18_RS10020 (NCTC6403_02059) treR 2082264..2082977 (+) 714 WP_138126774.1 trehalose operon repressor Regulator
  FGL18_RS10030 (NCTC6403_02060) - 2083258..2083596 (-) 339 WP_138126776.1 helix-turn-helix domain-containing protein -
  FGL18_RS10035 (NCTC6403_02061) - 2083782..2084636 (+) 855 WP_138126778.1 VOC family protein -
  FGL18_RS10040 (NCTC6403_02062) yaaA 2084678..2085409 (+) 732 WP_138126780.1 peroxide stress protein YaaA -
  FGL18_RS10045 (NCTC6403_02063) nrdG 2085581..2086195 (-) 615 WP_138126782.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  FGL18_RS10050 (NCTC6403_02064) - 2086199..2086405 (-) 207 Protein_1919 GNAT family N-acetyltransferase -
  FGL18_RS10055 (NCTC6403_02065) tnpA 2086543..2087016 (-) 474 WP_070001343.1 IS200/IS605 family transposase -
  FGL18_RS10060 (NCTC6403_02066) - 2087154..2087450 (-) 297 Protein_1921 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.74 Da        Isoelectric Point: 9.4831

>NTDB_id=1127823 FGL18_RS10020 WP_138126774.1 2082264..2082977(+) (treR) [Streptococcus dysgalactiae strain NCTC6403]
MTKYERIYKDLETKINQDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1127823 FGL18_RS10020 WP_138126774.1 2082264..2082977(+) (treR) [Streptococcus dysgalactiae strain NCTC6403]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATCAACCAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGTTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATCTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
CAAAATTTTACTTGACCTTGGCTCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment