Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGL18_RS09270 Genome accession   NZ_LR594046
Coordinates   1923927..1925288 (-) Length   453 a.a.
NCBI ID   WP_138126586.1    Uniprot ID   A0A9X7SIV6
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1918927..1930288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS09245 (NCTC6403_01898) - 1919647..1920915 (-) 1269 WP_138126578.1 MFS transporter -
  FGL18_RS09250 (NCTC6403_01899) - 1921010..1921711 (-) 702 WP_138126580.1 hypothetical protein -
  FGL18_RS09255 (NCTC6403_01900) - 1921715..1922161 (-) 447 WP_003053367.1 LytTR family DNA-binding domain-containing protein -
  FGL18_RS09260 (NCTC6403_01901) - 1922391..1923107 (-) 717 WP_138126582.1 TIGR00266 family protein -
  FGL18_RS09265 (NCTC6403_01902) - 1923243..1923737 (-) 495 WP_138126584.1 carbonic anhydrase -
  FGL18_RS09270 (NCTC6403_01903) radA 1923927..1925288 (-) 1362 WP_138126586.1 DNA repair protein RadA Machinery gene
  FGL18_RS09275 (NCTC6403_01904) - 1925371..1925817 (-) 447 WP_129556329.1 dUTP diphosphatase -
  FGL18_RS09280 (NCTC6403_01905) - 1925925..1926692 (-) 768 WP_138126588.1 epoxyqueuosine reductase QueH -
  FGL18_RS09285 (NCTC6403_01906) - 1926811..1928595 (-) 1785 WP_138126590.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49355.66 Da        Isoelectric Point: 6.0944

>NTDB_id=1127820 FGL18_RS09270 WP_138126586.1 1923927..1925288(-) (radA) [Streptococcus dysgalactiae strain NCTC6403]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1127820 FGL18_RS09270 WP_138126586.1 1923927..1925288(-) (radA) [Streptococcus dysgalactiae strain NCTC6403]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCCACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAACGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTAAATCCAGATTTCTTGATTATTGATTCTATCCAGACCATTATGAGTCCTGATATTACAGGTGTTCAAGGATCAGT
TAGCCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGAACCTTGGCTGGTCCCCGCATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCTTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTCGTTGAGGTCTTAAACCCAAGCCAAGTTTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTAACCCCAACCGTTTTTGGGAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGTGTAAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCTATTGATTTAGCTGTAGCCGTAGCCA
TCGCATCCAGTTATAAAGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGGATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATCTACGCCCCTAAAAATGCTCT
GCAGGGTATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.726

99.779

0.865
  radA Streptococcus pneumoniae D39

86.504

99.779

0.863
  radA Streptococcus pneumoniae R6

86.504

99.779

0.863
  radA Streptococcus pneumoniae Rx1

86.504

99.779

0.863
  radA Streptococcus mitis SK321

86.504

99.779

0.863
  radA Streptococcus pneumoniae TIGR4

86.504

99.779

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

100

0.625

Multiple sequence alignment