Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   FGL18_RS07235 Genome accession   NZ_LR594046
Coordinates   1498460..1500751 (+) Length   763 a.a.
NCBI ID   WP_115246233.1    Uniprot ID   A0A380JW02
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 1493460..1505751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS07210 (NCTC6403_01487) - 1494145..1494624 (-) 480 WP_111717082.1 ferrous iron transport protein A -
  FGL18_RS07215 (NCTC6403_01488) - 1494768..1496240 (-) 1473 WP_138126073.1 IS1182 family transposase -
  FGL18_RS07220 (NCTC6403_01489) - 1496383..1497117 (-) 735 WP_138126075.1 amino acid ABC transporter ATP-binding protein -
  FGL18_RS07225 (NCTC6403_01490) - 1497117..1497803 (-) 687 WP_003051835.1 amino acid ABC transporter permease -
  FGL18_RS07230 (NCTC6403_01491) - 1497931..1498161 (-) 231 WP_003051836.1 DUF1797 family protein -
  FGL18_RS07235 (NCTC6403_01492) clpE 1498460..1500751 (+) 2292 WP_115246233.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  FGL18_RS07240 (NCTC6403_01493) - 1500869..1501324 (+) 456 WP_022554961.1 NUDIX hydrolase -
  FGL18_RS07245 (NCTC6403_01494) - 1501374..1501676 (+) 303 WP_003051842.1 DUF1827 family protein -
  FGL18_RS07250 (NCTC6403_01495) ileS 1502090..1504891 (-) 2802 WP_138126077.1 isoleucine--tRNA ligase -

Sequence


Protein


Download         Length: 763 a.a.        Molecular weight: 84911.17 Da        Isoelectric Point: 5.2743

>NTDB_id=1127809 FGL18_RS07235 WP_115246233.1 1498460..1500751(+) (clpE) [Streptococcus dysgalactiae strain NCTC6403]
MLCQNCNLNESTIHLYTNVNGKQKQVDLCQNCYQIMKTDPTNPILGGLNGGQRAQERSSNPFFDDFFGDLNNFRAFGNLP
NTPPTQAGQNGNGGGRHGGHFNGQRPTQPQTPNQQAKGLLEEFGINVTDIARHGDIDPVIGRDDEITRVIEILNRRTKNN
PVLIGEPGVGKTAVVEGLAQKIVDGTVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRQRKDVILFIDEIHE
IVGAGSAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILKGIQPKYEDYHH
VKYSPAAIEAAAHLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDKRLIEAENLKAQATRDEDYERAAYFRDQ
IAKYKEMQAQKVDEQDIPIITEKTIEAIIEQKTNIPVGDLKEKEQSQLVNLANDLKAHVIGQDDAVDKIAKAIRRNRVGL
GTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADNMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEQVRRNPY
SLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKSEASVGFGAAREGRTSSVLGELSNFFS
PEFMNRFDGIIEFKALSKDNLLHIVDLMLEDVNKRLGYNGIHLDVTQKVKEKLVDLGYDPKMGARPLRRTIQDYIEDAIT
DYYLEHPTEKDLRAIMTSNGNIMIKAAKKDETVTAKQDQTDEN

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=1127809 FGL18_RS07235 WP_115246233.1 1498460..1500751(+) (clpE) [Streptococcus dysgalactiae strain NCTC6403]
ATGCTTTGTCAAAATTGTAATTTAAACGAATCAACCATTCACCTCTACACGAATGTTAATGGAAAACAAAAACAAGTTGA
CCTTTGTCAAAACTGTTATCAAATCATGAAGACCGACCCTACTAATCCTATTTTAGGTGGTCTAAATGGAGGACAAAGAG
CCCAAGAACGCTCATCCAACCCCTTCTTTGATGACTTTTTTGGTGATTTAAATAATTTTAGAGCCTTTGGCAACCTTCCA
AATACCCCACCTACTCAGGCAGGGCAAAATGGAAATGGTGGGGGACGCCATGGTGGTCATTTCAATGGGCAACGTCCCAC
TCAGCCACAAACACCAAATCAGCAAGCAAAGGGCTTGTTAGAAGAATTTGGGATTAATGTCACAGATATTGCAAGACATG
GTGATATTGACCCTGTCATCGGTCGAGATGACGAGATTACACGTGTCATCGAAATCCTTAACCGTCGGACTAAAAATAAT
CCTGTGCTTATTGGGGAACCAGGAGTTGGTAAAACAGCTGTTGTAGAAGGTCTAGCCCAGAAAATTGTAGATGGCACAGT
ACCTCACAAATTGCAAGGTAAGCAAGTGATTCGTCTAGATGTGGTTAGTCTTGTTCAAGGCACAGGTATCCGTGGTCAAT
TCGAAGAACGCATGCAAAAATTAATGGAAGAAATTCGTCAGCGCAAAGATGTGATTCTCTTTATTGATGAAATTCATGAA
ATTGTAGGTGCTGGTTCTGCTGGAGATGGCAATATGGATGCTGGCAATATTTTAAAACCAGCCTTGGCCCGTGGTGAGTT
GCAACTCGTTGGTGCTACTACCTTAAATGAATACCGTATTATTGAAAAAGATGCTGCCTTGGAGCGGCGGATGCAGCCGG
TGAAAGTTGACGAACCTTCTGTAGAAGAAACCATTACCATCTTAAAAGGTATCCAGCCCAAATATGAAGACTATCATCAT
GTCAAATATAGCCCAGCAGCTATCGAGGCTGCTGCACACTTATCCAATCGCTACATTCAAGACCGATTCCTCCCTGATAA
GGCCATTGACCTTCTGGACGAAGCTGGTTCAAAAATGAATTTAACTCTTAATTTTGTTGACCCTAAAGAGATTGACAAAC
GTCTAATTGAAGCAGAAAACCTCAAGGCTCAAGCAACTCGTGACGAAGATTACGAACGAGCAGCCTATTTCCGTGATCAA
ATTGCGAAATACAAGGAAATGCAAGCTCAAAAAGTCGACGAACAGGATATTCCTATCATTACTGAAAAAACCATTGAAGC
CATCATTGAACAAAAAACCAATATTCCAGTTGGCGACTTGAAAGAAAAAGAACAATCTCAACTCGTTAATTTGGCTAATG
ATTTGAAAGCTCACGTGATTGGCCAAGATGATGCCGTTGACAAAATTGCCAAGGCCATCCGCCGGAACCGTGTGGGATTG
GGAACTCCAAATCGTCCTATTGGTTCTTTCCTATTCGTTGGGCCAACAGGTGTTGGTAAAACAGAGTTATCTAAGCAACT
AGCTATTGAACTCTTTGGCTCTGCTGACAATATGATTCGCTTTGATATGTCCGAATACATGGAAAAACATGCCGTTGCTA
AATTAGTCGGGGCTCCTCCTGGTTATGTGGGCTATGAAGAAGCTGGCCAGTTGACGGAACAAGTTCGCCGCAACCCATAT
TCACTTATTCTCTTAGATGAAGTGGAAAAGGCTCATCCTGACGTCATGCACATGTTTTTACAAGTTCTTGATGATGGCCG
TTTAACAGATGGTCAAGGACGGACAGTCAGCTTCAAAGATACTATTATTATCATGACCTCTAATGCCGGAACAGGTAAAA
GCGAAGCTTCTGTTGGATTTGGTGCAGCTAGAGAAGGACGAACAAGCTCTGTCCTTGGTGAATTAAGTAACTTCTTCAGC
CCAGAGTTCATGAACCGTTTCGATGGTATTATTGAATTTAAGGCCTTGAGCAAAGATAACCTCTTGCATATCGTTGATTT
AATGCTGGAAGATGTTAATAAGCGCTTAGGCTATAATGGGATTCACCTTGATGTGACACAAAAAGTCAAAGAAAAATTAG
TAGATTTAGGCTATGATCCTAAAATGGGTGCTCGACCACTCCGTCGTACCATCCAAGATTATATCGAAGATGCGATTACG
GACTACTATTTGGAACACCCCACTGAAAAGGACTTGCGTGCCATAATGACAAGTAACGGTAATATCATGATTAAAGCTGC
CAAAAAAGATGAAACGGTAACAGCTAAACAAGATCAGACCGACGAGAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A380JW02

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

85.714

99.083

0.849

  clpE Streptococcus pneumoniae Rx1

83.926

99.476

0.835

  clpE Streptococcus pneumoniae D39

83.926

99.476

0.835

  clpE Streptococcus pneumoniae R6

83.926

99.476

0.835

  clpE Streptococcus pneumoniae TIGR4

83.794

99.476

0.834

  clpC Lactococcus lactis subsp. cremoris KW2

76.63

96.461

0.739

  clpC Bacillus subtilis subsp. subtilis str. 168

49.781

89.777

0.447

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.462

85.19

0.396

  clpC Streptococcus pneumoniae Rx1

48

81.913

0.393

  clpC Streptococcus pneumoniae D39

48

81.913

0.393

  clpC Streptococcus pneumoniae TIGR4

48

81.913

0.393

  clpC Streptococcus mutans UA159

47.573

80.996

0.385

  clpC Streptococcus thermophilus LMD-9

46.635

81.782

0.381

  clpC Streptococcus thermophilus LMG 18311

46.314

81.782

0.379


Multiple sequence alignment