Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   FGL14_RS09825 Genome accession   NZ_LR594045
Coordinates   1944443..1945495 (-) Length   350 a.a.
NCBI ID   WP_012767556.1    Uniprot ID   A0A9X8T4H4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1885107..1966827 1944443..1945495 within 0


Gene organization within MGE regions


Location: 1885107..1966827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL14_RS09530 (NCTC9413_01970) rpsF 1885489..1885779 (-) 291 WP_138084030.1 30S ribosomal protein S6 -
  FGL14_RS09535 (NCTC9413_01971) - 1886739..1887032 (-) 294 WP_015058032.1 hypothetical protein -
  FGL14_RS09540 (NCTC9413_01972) mutY 1887198..1888364 (+) 1167 WP_138084031.1 A/G-specific adenine glycosylase -
  FGL14_RS09545 (NCTC9413_01973) trxA 1888415..1888729 (-) 315 WP_003052691.1 thioredoxin -
  FGL14_RS09550 (NCTC9413_01974) - 1888956..1890261 (+) 1306 Protein_1798 FAD-containing oxidoreductase -
  FGL14_RS09555 (NCTC9413_01976) - 1890354..1892690 (-) 2337 WP_014612575.1 endonuclease MutS2 -
  FGL14_RS09560 (NCTC9413_01977) - 1892846..1893391 (-) 546 WP_015058036.1 CvpA family protein -
  FGL14_RS09565 (NCTC9413_01978) - 1893394..1893702 (-) 309 WP_003052702.1 hypothetical protein -
  FGL14_RS09570 (NCTC9413_01979) rnhC 1893859..1894758 (+) 900 WP_042357991.1 ribonuclease HIII -
  FGL14_RS09575 (NCTC9413_01980) lepB 1894780..1895373 (+) 594 WP_014612577.1 signal peptidase I -
  FGL14_RS09580 (NCTC9413_01981) - 1895433..1897886 (+) 2454 WP_110408165.1 ATP-dependent RecD-like DNA helicase -
  FGL14_RS09585 (NCTC9413_01982) - 1897977..1898465 (+) 489 WP_138084032.1 hypothetical protein -
  FGL14_RS09590 (NCTC9413_01983) dinB 1898554..1899651 (-) 1098 WP_138084033.1 DNA polymerase IV -
  FGL14_RS09595 (NCTC9413_01984) pflB 1899860..1902187 (+) 2328 WP_003056840.1 formate C-acetyltransferase -
  FGL14_RS09600 (NCTC9413_01985) - 1902291..1902743 (+) 453 WP_003056842.1 GNAT family N-acetyltransferase -
  FGL14_RS09605 (NCTC9413_01986) - 1902867..1904378 (-) 1512 WP_242002706.1 glycoside hydrolase family 13 protein -
  FGL14_RS11550 (NCTC9413_01987) - 1904421..1904774 (-) 354 WP_242002707.1 alpha amylase N-terminal ig-like domain-containing protein -
  FGL14_RS09610 (NCTC9413_01988) - 1904861..1906432 (-) 1572 WP_048327153.1 extracellular solute-binding protein -
  FGL14_RS09615 (NCTC9413_01989) - 1906488..1907150 (-) 663 WP_003056844.1 YesL family protein -
  FGL14_RS09620 (NCTC9413_01990) - 1907162..1908061 (-) 900 WP_003059927.1 carbohydrate ABC transporter permease -
  FGL14_RS09625 (NCTC9413_01991) - 1908074..1909012 (-) 939 WP_003056823.1 ABC transporter permease subunit -
  FGL14_RS09630 (NCTC9413_01992) - 1909619..1910650 (+) 1032 WP_003056847.1 LacI family DNA-binding transcriptional regulator -
  FGL14_RS09635 (NCTC9413_01993) - 1910762..1911696 (-) 935 Protein_1816 serine hydrolase domain-containing protein -
  FGL14_RS09640 (NCTC9413_01994) - 1911693..1912445 (-) 753 WP_003056834.1 CppA N-terminal domain-containing protein -
  FGL14_RS09645 (NCTC9413_01995) - 1912707..1913612 (+) 906 WP_003060954.1 sulfite exporter TauE/SafE family protein -
  FGL14_RS09650 (NCTC9413_01996) gla 1913716..1914564 (-) 849 WP_138084034.1 aquaglyceroporin Gla -
  FGL14_RS09655 (NCTC9413_01997) - 1914691..1916973 (+) 2283 WP_138084035.1 Xaa-Pro dipeptidyl-peptidase -
  FGL14_RS09660 (NCTC9413_01998) - 1917046..1917438 (-) 393 WP_138084036.1 pyridoxamine 5'-phosphate oxidase family protein -
  FGL14_RS09665 (NCTC9413_01999) - 1917608..1917829 (-) 222 WP_003060222.1 helix-turn-helix transcriptional regulator -
  FGL14_RS09670 (NCTC9413_02000) - 1917999..1918373 (+) 375 WP_003056692.1 helix-turn-helix transcriptional regulator -
  FGL14_RS09675 (NCTC9413_02001) - 1918936..1919415 (-) 480 WP_227985708.1 hypothetical protein -
  FGL14_RS09680 (NCTC9413_02002) - 1919646..1920836 (-) 1191 WP_002983018.1 site-specific integrase -
  FGL14_RS09685 (NCTC9413_02003) - 1920912..1921115 (-) 204 WP_002983016.1 excisionase -
  FGL14_RS09695 (NCTC9413_02004) - 1921544..1921795 (-) 252 WP_002983011.1 helix-turn-helix domain-containing protein -
  FGL14_RS09700 (NCTC9413_02005) - 1921776..1922219 (-) 444 WP_009220377.1 sigma-70 family RNA polymerase sigma factor -
  FGL14_RS09705 (NCTC9413_02006) - 1922725..1924191 (-) 1467 WP_002983007.1 energy-coupling factor ABC transporter ATP-binding protein -
  FGL14_RS09710 (NCTC9413_02007) - 1924219..1924908 (-) 690 WP_231846835.1 energy-coupling factor transporter transmembrane component T -
  FGL14_RS09715 (NCTC9413_02008) - 1924950..1925585 (-) 636 WP_227985709.1 MptD family putative ECF transporter S component -
  FGL14_RS09720 (NCTC9413_02009) - 1925588..1927330 (-) 1743 WP_003060864.1 ABC transporter ATP-binding protein -
  FGL14_RS09725 (NCTC9413_02010) - 1927323..1929110 (-) 1788 WP_002982991.1 ABC transporter ATP-binding protein -
  FGL14_RS09730 (NCTC9413_02011) - 1929310..1929924 (+) 615 WP_138084037.1 TetR/AcrR family transcriptional regulator -
  FGL14_RS09735 (NCTC9413_02012) - 1930255..1930863 (+) 609 WP_002982976.1 replication protein -
  FGL14_RS09740 (NCTC9413_02013) - 1930838..1931083 (+) 246 WP_002982972.1 DUF3173 family protein -
  FGL14_RS09745 (NCTC9413_02014) - 1931085..1932236 (+) 1152 WP_032467247.1 site-specific integrase -
  FGL14_RS09750 (NCTC9413_02015) - 1932314..1932613 (+) 300 WP_002982967.1 YbaB/EbfC family nucleoid-associated protein -
  FGL14_RS09755 (NCTC9413_02016) - 1932670..1933407 (-) 738 WP_002982961.1 MerR family transcriptional regulator -
  FGL14_RS09760 (NCTC9413_02017) - 1933560..1934147 (-) 588 WP_172600568.1 3'-5' exonuclease -
  FGL14_RS09765 (NCTC9413_02018) - 1934196..1934726 (-) 531 WP_002992269.1 DUF536 domain-containing protein -
  FGL14_RS09770 (NCTC9413_02019) - 1934930..1936105 (+) 1176 WP_138084039.1 NAD(P)/FAD-dependent oxidoreductase -
  FGL14_RS09775 (NCTC9413_02020) - 1936602..1937210 (+) 609 WP_223846021.1 hypothetical protein -
  FGL14_RS09780 (NCTC9413_02021) - 1937179..1937577 (+) 399 WP_138084040.1 hypothetical protein -
  FGL14_RS09785 (NCTC9413_02022) - 1937632..1938060 (-) 429 WP_003056682.1 hypothetical protein -
  FGL14_RS09790 (NCTC9413_02023) rpsN 1938408..1938677 (+) 270 WP_003052772.1 30S ribosomal protein S14 -
  FGL14_RS09795 (NCTC9413_02024) tsaD 1939007..1940023 (-) 1017 WP_138084041.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  FGL14_RS09800 (NCTC9413_02025) rimI 1940013..1940438 (-) 426 WP_003056684.1 ribosomal protein S18-alanine N-acetyltransferase -
  FGL14_RS09805 (NCTC9413_02026) tsaB 1940440..1941138 (-) 699 WP_138084042.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  FGL14_RS09810 (NCTC9413_02027) - 1941424..1941654 (+) 231 WP_003056704.1 DNA-dependent RNA polymerase subunit epsilon -
  FGL14_RS09815 (NCTC9413_02028) rnjA 1941656..1943338 (+) 1683 WP_003056700.1 ribonuclease J1 -
  FGL14_RS09820 (NCTC9413_02029) amiF 1943518..1944450 (-) 933 WP_065361139.1 ATP-binding cassette domain-containing protein Regulator
  FGL14_RS09825 (NCTC9413_02030) oppD 1944443..1945495 (-) 1053 WP_012767556.1 ABC transporter ATP-binding protein Regulator
  FGL14_RS09830 (NCTC9413_02031) - 1945507..1946538 (-) 1032 WP_138084043.1 ABC transporter permease -
  FGL14_RS09835 (NCTC9413_02032) - 1946548..1947462 (-) 915 WP_003052794.1 ABC transporter permease -
  FGL14_RS09840 (NCTC9413_02033) - 1947730..1949385 (-) 1656 WP_003058031.1 peptide ABC transporter substrate-binding protein -
  FGL14_RS09845 (NCTC9413_02034) glnA 1949618..1950964 (-) 1347 WP_003058015.1 type I glutamate--ammonia ligase -
  FGL14_RS09850 (NCTC9413_02035) - 1951002..1951373 (-) 372 WP_138084044.1 MerR family transcriptional regulator -
  FGL14_RS09855 (NCTC9413_02036) - 1951450..1951971 (-) 522 WP_003052804.1 aromatic acid exporter family protein -
  FGL14_RS09860 (NCTC9413_02037) - 1952468..1953664 (-) 1197 WP_003058011.1 phosphoglycerate kinase -
  FGL14_RS09865 (NCTC9413_02038) - 1953848..1954705 (-) 858 WP_003058027.1 5'-nucleotidase, lipoprotein e(P4) family -
  FGL14_RS09870 (NCTC9413_02039) gap 1954889..1955899 (-) 1011 WP_003052840.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  FGL14_RS09875 (NCTC9413_02040) fusA 1956239..1958317 (-) 2079 WP_003058029.1 elongation factor G -
  FGL14_RS09880 (NCTC9413_02041) rpsG 1958821..1959291 (-) 471 WP_002992078.1 30S ribosomal protein S7 -
  FGL14_RS09885 (NCTC9413_02042) rpsL 1959312..1959725 (-) 414 WP_003052844.1 30S ribosomal protein S12 -
  FGL14_RS09890 (NCTC9413_02043) - 1959986..1962607 (-) 2622 WP_138084045.1 SEC10/PgrA surface exclusion domain-containing protein -
  FGL14_RS09895 (NCTC9413_02044) purR 1962598..1963437 (-) 840 WP_003058017.1 pur operon repressor -
  FGL14_RS09900 (NCTC9413_02045) - 1963537..1964475 (-) 939 WP_012767558.1 3'-5' exoribonuclease YhaM family protein -
  FGL14_RS09905 (NCTC9413_02046) - 1964465..1965736 (-) 1272 WP_003060141.1 DNA recombination protein RmuC -
  FGL14_RS09910 (NCTC9413_02047) - 1965738..1966370 (-) 633 WP_046177619.1 thiamine diphosphokinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38667.36 Da        Isoelectric Point: 5.8490

>NTDB_id=1127761 FGL14_RS09825 WP_012767556.1 1944443..1945495(-) (oppD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
MTNETILSVKNLHVDFKTYAGDVKAIRDISFDLKKGETLAIVGESGSGKSVTTRTLMGLNAKNANLSGEIDFKGKKLNAL
KEEEWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHENISKQKALSRALELMHQVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQAQILKLMKEIQQQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTASGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHVEAPPMFKVSDTHYAATWLL
DERAPKVTPPVQIQKRWAKWQKREGGKLNE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1127761 FGL14_RS09825 WP_012767556.1 1944443..1945495(-) (oppD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
ATGACAAACGAAACCATTTTAAGTGTTAAAAACCTCCACGTTGATTTCAAAACCTATGCAGGGGATGTGAAAGCTATTCG
CGATATTAGTTTTGACCTCAAAAAAGGAGAAACGCTTGCGATTGTTGGGGAATCTGGATCAGGAAAATCAGTGACCACTA
GGACCTTGATGGGCTTAAATGCTAAAAATGCTAACCTTTCTGGGGAAATTGATTTTAAAGGAAAAAAACTCAATGCCCTT
AAGGAAGAAGAATGGGTTAAGGTACGTGGTAAAGAAATTGCCATGATTTTCCAAGACCCAATGACCAGTCTCGATCCAAC
GATGAAAATCGGAATGCAAATTGCTGAAGCTATTTTGATTCATGAGAATATTAGTAAGCAAAAAGCCTTGAGTCGTGCTC
TTGAATTGATGCATCAAGTAGGTATTCCAAATGCTGAAGAGCATATTAATGATTATCCACATCAGTGGTCAGGTGGGATG
CGTCAGCGTGCTGTGATTGCTATCGCTCTCGCAGCTAATCCAGAAATCCTGATTGCTGATGAACCGACCACAGCACTTGA
TGTTACCATTCAGGCACAAATCTTGAAATTAATGAAAGAAATCCAACAACAGACGGAATCATCTATTATTTTCATTACCC
ATGACCTTGGAGTTGTGGCTGGTATGGCTGACCGTGTCGCGGTAATGTATGCTGGAAAAATTGTTGAGTATGGAACGGTG
GATGAAGTCTTTTATAACCCGCAACACCCTTATACATGGGGCTTGCTTAATTCTATGCCAACCACAGATACCGCCTCAGG
GAGTTTAGAATCTATTCCAGGAACGCCGCCTGACTTGCTTAATCCTCCTAAGGGAGATGCTTTTGCAGCCCGCAATGAAT
TTGCCTTGGATATTGATCATGTGGAGGCTCCGCCGATGTTTAAGGTCAGCGACACCCATTATGCGGCAACTTGGTTATTA
GATGAGCGAGCGCCCAAAGTCACTCCGCCAGTTCAAATTCAAAAACGATGGGCAAAATGGCAAAAACGAGAAGGAGGCAA
GCTAAATGAATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.429

100

0.794
  amiE Streptococcus salivarius strain HSISS4

55.394

98

0.543
  amiE Streptococcus thermophilus LMG 18311

56.325

94.857

0.534
  amiE Streptococcus thermophilus LMD-9

56.325

94.857

0.534

Multiple sequence alignment