Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   FGL14_RS07850 Genome accession   NZ_LR594045
Coordinates   1532965..1535256 (+) Length   763 a.a.
NCBI ID   WP_065359030.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 1527965..1540256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL14_RS07825 (NCTC9413_01623) feoB 1528055..1530214 (-) 2160 WP_003060223.1 ferrous iron transport protein B -
  FGL14_RS07830 (NCTC9413_01624) - 1530211..1530690 (-) 480 WP_003056958.1 ferrous iron transport protein A -
  FGL14_RS07835 (NCTC9413_01625) - 1530889..1531623 (-) 735 WP_015017221.1 amino acid ABC transporter ATP-binding protein -
  FGL14_RS07840 (NCTC9413_01626) - 1531623..1532309 (-) 687 WP_138083955.1 amino acid ABC transporter permease -
  FGL14_RS07845 (NCTC9413_01627) - 1532437..1532667 (-) 231 WP_003051836.1 DUF1797 family protein -
  FGL14_RS07850 (NCTC9413_01628) clpE 1532965..1535256 (+) 2292 WP_065359030.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  FGL14_RS07855 (NCTC9413_01629) - 1535374..1535829 (+) 456 WP_022554961.1 NUDIX hydrolase -
  FGL14_RS07860 (NCTC9413_01630) - 1535879..1536181 (+) 303 WP_003051842.1 DUF1827 family protein -
  FGL14_RS07865 (NCTC9413_01632) ileS 1536584..1539385 (-) 2802 WP_003062434.1 isoleucine--tRNA ligase -

Sequence


Protein


Download         Length: 763 a.a.        Molecular weight: 84937.23 Da        Isoelectric Point: 5.3453

>NTDB_id=1127750 FGL14_RS07850 WP_065359030.1 1532965..1535256(+) (clpE) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
MLCQNCNLNESTIHLYTNVNGKQKQVDLCQNCYQIMKTDPTNPILGGLNGGQRAQERSSNPFFDDFFGDLNNFRAFGNLP
NTPPTQAGQNGNGGGRHGGHFNGQRPTQPQTPNQQAKGLLEEFGINVTDIARHGDIDPVIGRDDEITRVIEILNRRTKNN
PVLIGEPGVGKTAVVEGLAQKIVDGTVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERIQKLMEEIRQRKDVILFIDEIHE
IVGAGSAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILKGIQPKYEDYHH
VKYSPAAIEAAAHLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDKRLIEAENLKAQATRDEDYERAAYFRDQ
IAKFKEMQAQKVDEQDIPIITEKTIEAIIEQKTNIPVGDLKEKEQSQLVNLANDLKAHVIGQDDAVDKIAKAIRRNRVGL
GTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADNMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEQVRRNPY
SLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKSEASVGFGAAREGRTSSVLGELSNFFS
PEFMNRFDGIIEFKALSKDNLLHIVDLMLEDVNKRLSYNGIHLDVTQKVKEKLVDLGYDPKMGARPLRRTIQDYIEDAIT
DYYLEHPTEKDLRAIMTSNSNIMIKAAKKDETVTAKQDKTDEN

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=1127750 FGL14_RS07850 WP_065359030.1 1532965..1535256(+) (clpE) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
ATGCTTTGTCAAAATTGTAATTTAAACGAATCAACCATTCACCTCTACACGAATGTTAATGGAAAACAAAAACAAGTTGA
CCTTTGTCAAAACTGTTATCAAATCATGAAGACTGACCCTACTAATCCTATTTTAGGTGGTCTAAATGGAGGTCAAAGAG
CCCAAGAACGCTCATCCAACCCCTTCTTTGATGACTTTTTTGGGGACTTAAATAATTTTAGAGCCTTTGGCAACCTTCCA
AATACCCCACCTACTCAGGCAGGGCAAAATGGAAATGGTGGGGGACGCCATGGTGGTCATTTCAATGGACAACGTCCCAC
TCAGCCACAAACACCAAATCAGCAAGCAAAAGGCTTGCTAGAAGAATTTGGCATTAATGTGACCGATATTGCAAGACATG
GTGATATTGACCCTGTCATCGGTCGAGATGACGAGATTACACGTGTCATTGAAATCCTTAACCGTCGGACTAAAAATAAC
CCTGTGCTTATTGGGGAACCAGGAGTTGGTAAAACAGCTGTTGTAGAAGGTCTAGCCCAAAAAATTGTAGATGGCACAGT
ACCTCACAAATTGCAAGGTAAGCAAGTGATCCGTCTAGATGTGGTTAGTCTTGTTCAAGGCACAGGTATCCGTGGTCAAT
TCGAAGAACGCATACAAAAATTAATGGAAGAAATTCGTCAACGCAAAGATGTGATTCTCTTTATTGATGAAATTCATGAA
ATTGTAGGTGCTGGTTCTGCTGGAGATGGCAATATGGATGCTGGCAATATTTTAAAACCAGCCTTGGCCCGTGGTGAGTT
GCAACTCGTTGGTGCTACTACCTTAAATGAATACCGTATTATTGAAAAAGATGCTGCCTTGGAGCGGCGGATGCAGCCGG
TGAAAGTTGACGAACCTTCTGTAGAAGAAACCATTACCATCTTAAAAGGTATCCAACCCAAATATGAAGACTATCATCAT
GTCAAATATAGCCCAGCAGCTATCGAGGCTGCTGCACACTTATCCAATCGCTACATCCAAGACCGATTCCTCCCTGATAA
GGCCATTGACCTTCTGGACGAAGCTGGTTCAAAAATGAATTTAACTCTTAATTTTGTTGACCCTAAAGAGATTGACAAAC
GTCTGATTGAAGCAGAAAACCTCAAAGCTCAAGCAACTCGTGACGAAGATTACGAACGAGCAGCCTATTTCCGTGATCAA
ATTGCGAAATTCAAGGAAATGCAAGCTCAAAAAGTCGACGAACAGGATATTCCTATCATTACTGAAAAAACTATTGAAGC
CATCATTGAACAAAAAACCAATATTCCAGTTGGCGACTTGAAAGAAAAAGAACAATCTCAACTCGTTAATTTGGCTAATG
ATTTGAAAGCTCACGTGATTGGCCAAGATGATGCCGTTGACAAAATTGCCAAGGCCATTCGCCGGAACCGTGTGGGATTG
GGAACTCCAAATCGTCCTATTGGTTCTTTCCTATTCGTTGGGCCAACAGGTGTTGGTAAAACAGAGTTGTCTAAGCAACT
AGCTATTGAACTCTTTGGCTCTGCTGACAATATGATTCGCTTTGATATGTCCGAATACATGGAAAAACATGCCGTTGCTA
AATTAGTCGGGGCTCCTCCTGGTTATGTGGGCTATGAAGAAGCTGGCCAGTTAACGGAACAAGTTCGCCGCAACCCATAT
TCACTTATTCTCTTAGATGAGGTGGAAAAGGCTCATCCTGACGTCATGCACATGTTTTTACAAGTTCTTGATGATGGCCG
TTTAACAGATGGTCAAGGACGGACAGTCAGCTTCAAGGATACTATTATTATCATGACCTCTAATGCCGGAACAGGTAAAA
GCGAAGCTTCTGTTGGATTTGGTGCAGCTAGAGAAGGACGAACAAGCTCTGTCCTTGGTGAATTAAGTAACTTCTTCAGC
CCAGAGTTCATGAACCGTTTCGATGGTATTATTGAATTTAAGGCCTTGAGCAAAGATAACCTCTTGCATATCGTTGATTT
AATGCTGGAAGATGTTAATAAGCGCTTAAGCTATAATGGGATTCACCTTGATGTGACACAAAAAGTCAAAGAAAAATTAG
TAGATTTAGGCTATGATCCTAAAATGGGTGCTCGACCACTCCGTCGTACCATCCAAGATTATATCGAAGATGCGATTACG
GACTACTATTTGGAACACCCCACTGAAAAGGACTTGCGTGCCATAATGACAAGTAACAGTAATATCATGATTAAAGCTGC
CAAAAAAGATGAAACGGTAACAGCTAAACAAGATAAGACCGACGAGAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

85.317

99.083

0.845

  clpE Streptococcus pneumoniae Rx1

83.926

99.476

0.835

  clpE Streptococcus pneumoniae D39

83.926

99.476

0.835

  clpE Streptococcus pneumoniae R6

83.926

99.476

0.835

  clpE Streptococcus pneumoniae TIGR4

83.794

99.476

0.834

  clpC Lactococcus lactis subsp. cremoris KW2

76.359

96.461

0.737

  clpC Bacillus subtilis subsp. subtilis str. 168

51.138

86.37

0.442

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.615

85.19

0.397

  clpC Streptococcus pneumoniae TIGR4

47.84

81.913

0.392

  clpC Streptococcus pneumoniae Rx1

47.84

81.913

0.392

  clpC Streptococcus pneumoniae D39

47.84

81.913

0.392

  clpC Streptococcus mutans UA159

47.411

80.996

0.384

  clpC Streptococcus thermophilus LMD-9

46.795

81.782

0.383

  clpC Streptococcus thermophilus LMG 18311

46.474

81.782

0.38


Multiple sequence alignment