Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrR   Type   Regulator
Locus tag   FGL05_RS03765 Genome accession   NZ_LR594044
Coordinates   765921..766361 (+) Length   146 a.a.
NCBI ID   WP_111712857.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8796     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 760921..771361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL05_RS03735 queE 761223..761942 (+) 720 Protein_768 7-carboxy-7-deazaguanine synthase QueE -
  FGL05_RS03740 (NCTC8796_00792) queF 762092..762583 (+) 492 WP_058814005.1 preQ(1) synthase -
  FGL05_RS03745 (NCTC8796_00793) - 762620..763117 (-) 498 WP_111712859.1 DUF308 domain-containing protein -
  FGL05_RS03750 (NCTC8796_00794) gdhA 763354..764703 (+) 1350 WP_043895060.1 NADP-specific glutamate dehydrogenase -
  FGL05_RS09410 (NCTC8796_00795) - 764861..765175 (+) 315 WP_233422855.1 hypothetical protein -
  FGL05_RS09415 - 765184..765369 (+) 186 WP_231872486.1 GNAT family N-acetyltransferase -
  FGL05_RS03760 (NCTC8796_00796) - 765366..765776 (+) 411 WP_111712858.1 peptide deformylase -
  FGL05_RS03765 (NCTC8796_00797) rcrR 765921..766361 (+) 441 WP_111712857.1 MarR family transcriptional regulator Regulator
  FGL05_RS03770 (NCTC8796_00798) rcrP 766365..768179 (+) 1815 WP_020916924.1 ABC transporter ATP-binding protein Regulator
  FGL05_RS03775 (NCTC8796_00799) rcrQ 768169..769941 (+) 1773 WP_020916923.1 ABC transporter ATP-binding protein Regulator
  FGL05_RS03780 (NCTC8796_00800) - 770041..770676 (+) 636 WP_020916922.1 GTP pyrophosphokinase family protein -
  FGL05_RS03785 (NCTC8796_00801) - 770679..771359 (+) 681 WP_020916921.1 response regulator transcription factor -

Sequence


Protein


Download         Length: 146 a.a.        Molecular weight: 16994.56 Da        Isoelectric Point: 9.6897

>NTDB_id=1127670 FGL05_RS03765 WP_111712857.1 765921..766361(+) (rcrR) [Streptococcus lutetiensis strain NCTC8796]
MRDKDLFSQFRYFINLMENRVHELGGQHGVENLAGPQGFAVLYLRENEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGF
IEVVPSEVDKRYKRVVLTELGKAKSKGIDAFHTAIHKQIFDGISREELEISGRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1127670 FGL05_RS03765 WP_111712857.1 765921..766361(+) (rcrR) [Streptococcus lutetiensis strain NCTC8796]
ATGCGAGACAAAGATTTGTTTTCACAATTTAGATACTTTATTAATTTGATGGAGAATCGGGTACATGAGCTCGGTGGGCA
GCATGGTGTTGAAAATCTCGCTGGTCCGCAGGGATTTGCAGTTCTTTATTTACGTGAGAATGAAGACAAAGAAGTTTTCA
TCAAGGACATTGAACGTAAGCTTAAGATTTCAAAATCTGTGACCAGTAATTTGATTAAACGAATGGAGAAGAATGGCTTT
ATTGAGGTGGTTCCGTCGGAGGTTGATAAGCGTTATAAGCGTGTCGTCTTGACTGAGCTGGGTAAAGCAAAATCCAAAGG
CATCGATGCTTTTCATACTGCTATTCATAAGCAAATTTTTGATGGTATTAGCCGTGAAGAGCTAGAAATTTCTGGTCGTG
TTTTTGATCGTATTTTGAAAAACTTAGAAAACAAGGAGTAA

Domains


Predicted by InterproScan.

(35-91)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

53.846

97.945

0.527


Multiple sequence alignment