Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL16_RS06250 Genome accession   NZ_LR594043
Coordinates   1187689..1189491 (-) Length   600 a.a.
NCBI ID   WP_014735702.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10237     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182689..1194491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL16_RS06225 (NCTC10237_01225) - 1184077..1184562 (-) 486 WP_014735706.1 LURP-one-related family protein -
  FGL16_RS06230 (NCTC10237_01227) prsA 1184827..1185828 (-) 1002 WP_014735705.1 peptidylprolyl isomerase PrsA -
  FGL16_RS06235 (NCTC10237_01228) - 1185889..1186608 (-) 720 WP_044678517.1 O-methyltransferase -
  FGL16_RS06240 (NCTC10237_01229) - 1186683..1187231 (-) 549 WP_002938103.1 DUF6630 family protein -
  FGL16_RS06245 (NCTC10237_01230) - 1187253..1187687 (-) 435 WP_014735703.1 hypothetical protein -
  FGL16_RS06250 (NCTC10237_01231) pepF 1187689..1189491 (-) 1803 WP_014735702.1 oligoendopeptidase F Regulator
  FGL16_RS06255 (NCTC10237_01232) coiA 1189720..1190661 (-) 942 WP_014735701.1 competence protein CoiA family protein Machinery gene
  FGL16_RS06260 (NCTC10237_01233) metG 1190722..1192725 (-) 2004 WP_014735700.1 methionine--tRNA ligase -
  FGL16_RS06265 (NCTC10237_01234) - 1192881..1193474 (+) 594 WP_014735699.1 DUF1361 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69203.42 Da        Isoelectric Point: 4.5992

>NTDB_id=1127638 FGL16_RS06250 WP_014735702.1 1187689..1189491(-) (pepF) [Streptococcus suis strain NCTC10237]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISKTQLSLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1127638 FGL16_RS06250 WP_014735702.1 1187689..1189491(-) (pepF) [Streptococcus suis strain NCTC10237]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACGGATGAAGCTTGGGA
AGCAGAACTTGCGGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTACTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCAAAACGCAACTTAGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCTTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTATGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAGGTCAAT
AACCTGAAAGCCCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTTATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTTAGTACTAAGATTTCTTACGAAGATGCTCTAAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGTGAAGATTATTCTGCTATCGTTAAAGAAGCTTTTGAAAATCGCTGGATTGA
TGTTCATGTTAATGAAGGAAAACGCTCAGGAGCTTATTCAGGCGGTGCCTACGATACCAACGCCTTCATGCTTCTCAATT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTTTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTCCTAACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAAGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGTGGGACAGTCT
TCCGCCAGACCCAATTCGCCGAGTTTGAGCAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAACCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACGGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCCCGTTT
GGAAGAATTAGAAGCTCTAGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697

Multiple sequence alignment