Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LG36_RS10215 Genome accession   NZ_CP009472
Coordinates   2130223..2130993 (-) Length   256 a.a.
NCBI ID   WP_038602221.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2125223..2135993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS11705 (LG36_1944) - 2126283..2126690 (+) 408 WP_052053864.1 hypothetical protein -
  LG36_RS10195 (LG36_1945) - 2126791..2127096 (+) 306 WP_021721760.1 bacteriocin immunity protein -
  LG36_RS10200 (LG36_1946) - 2127185..2128336 (+) 1152 WP_038602210.1 site-specific integrase -
  LG36_RS10205 (LG36_1947) - 2128549..2129175 (+) 627 WP_038602213.1 copper homeostasis protein CutC -
  LG36_RS10210 (LG36_1948) - 2129211..2130230 (-) 1020 WP_038602218.1 ABC transporter permease -
  LG36_RS10215 (LG36_1949) pptA 2130223..2130993 (-) 771 WP_038602221.1 ABC transporter ATP-binding protein Regulator
  LG36_RS10220 (LG36_1950) - 2131012..2132817 (-) 1806 WP_038602223.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  LG36_RS10225 (LG36_1951) - 2133096..2133497 (+) 402 WP_038602226.1 HIT family protein -
  LG36_RS10230 (LG36_1952) - 2133510..2133731 (+) 222 WP_021721766.1 hypothetical protein -
  LG36_RS10235 (LG36_1953) - 2133743..2134087 (-) 345 WP_015427109.1 hypothetical protein -
  LG36_RS10240 (LG36_1954) rplA 2134167..2134856 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  LG36_RS10245 (LG36_1955) rplK 2135153..2135578 (-) 426 WP_011677074.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28501.04 Da        Isoelectric Point: 4.5320

>NTDB_id=112757 LG36_RS10215 WP_038602221.1 2130223..2130993(-) (pptA) [Lactococcus lactis strain AI06]
MLKVTNLTGGYLGHPILKDLNFEIKEGELIGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=112757 LG36_RS10215 WP_038602221.1 2130223..2130993(-) (pptA) [Lactococcus lactis strain AI06]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTATCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
TGAGTTAATTGGACTCATTGGTTTAAATGGGGCAGGAAAATCGACAACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTATATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGATCCGCTTGCAATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

66.529

94.531

0.629
  pptA Streptococcus thermophilus LMD-9

66.116

94.531

0.625

Multiple sequence alignment