Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LG36_RS08875 Genome accession   NZ_CP009472
Coordinates   1864520..1865191 (-) Length   223 a.a.
NCBI ID   WP_038601769.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1859520..1870191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS08850 (LG36_1696) pheA 1859825..1860664 (-) 840 WP_038601754.1 prephenate dehydratase -
  LG36_RS08855 (LG36_1697) - 1860666..1861154 (-) 489 WP_038601758.1 shikimate kinase -
  LG36_RS08860 (LG36_1698) aroA 1861178..1862470 (-) 1293 WP_038601761.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LG36_RS08865 (LG36_1699) - 1862591..1863655 (-) 1065 WP_038601764.1 prephenate dehydrogenase -
  LG36_RS08870 (LG36_1700) - 1863658..1864533 (-) 876 WP_038601766.1 HAMP domain-containing sensor histidine kinase -
  LG36_RS08875 (LG36_1701) braR 1864520..1865191 (-) 672 WP_038601769.1 response regulator transcription factor Regulator
  LG36_RS08880 (LG36_1702) - 1865194..1866258 (-) 1065 WP_038601771.1 VanZ family protein -
  LG36_RS08885 (LG36_1703) - 1866438..1868441 (-) 2004 WP_038601774.1 FtsX-like permease family protein -
  LG36_RS08890 (LG36_1704) - 1868434..1869213 (-) 780 WP_038601776.1 ABC transporter ATP-binding protein -
  LG36_RS12115 - 1869228..1869371 (-) 144 WP_173402265.1 hypothetical protein -
  LG36_RS08895 (LG36_1705) - 1869402..1869758 (-) 357 WP_038601778.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25519.45 Da        Isoelectric Point: 4.8073

>NTDB_id=112745 LG36_RS08875 WP_038601769.1 1864520..1865191(-) (braR) [Lactococcus lactis strain AI06]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEVEHEEVELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=112745 LG36_RS08875 WP_038601769.1 1864520..1865191(-) (braR) [Lactococcus lactis strain AI06]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCCTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGTT
TGCCCTTTTATAGTGGTTTTTATTGGACAAATGAGCTGAGAAAACTTTCACAAATTCCTATTATCTTTATTTCTTCGGCC
TCGGATGACATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGAAGAAGTTATTCTTTTTCAGGGATTGAAAAATTAGAATTTGCTGGGTATGTTT
TGTCTGAAAATACTTTGATTTCAACTCAAGAAGTTGAACACGAAGAAGTTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGCGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413

Multiple sequence alignment