Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   FGK97_RS06480 Genome accession   NZ_LR594037
Coordinates   1305567..1307846 (+) Length   759 a.a.
NCBI ID   WP_021001944.1    Uniprot ID   A0AAP6BPV6
Organism   Streptococcus anginosus strain NCTC11064     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1300567..1312846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK97_RS06455 (NCTC11064_01330) - 1301556..1302098 (-) 543 WP_138099463.1 ClbS/DfsB family four-helix bundle protein -
  FGK97_RS06460 (NCTC11064_01331) - 1302172..1302306 (-) 135 WP_003023693.1 FeoB-associated Cys-rich membrane protein -
  FGK97_RS06465 (NCTC11064_01332) feoB 1302315..1304459 (-) 2145 WP_106079391.1 ferrous iron transport protein B -
  FGK97_RS06470 (NCTC11064_01333) - 1304456..1304932 (-) 477 WP_021001943.1 FeoA family protein -
  FGK97_RS06475 (NCTC11064_01334) - 1305098..1305328 (-) 231 WP_003023686.1 DUF1797 family protein -
  FGK97_RS06480 (NCTC11064_01335) clpE 1305567..1307846 (+) 2280 WP_021001944.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  FGK97_RS06485 (NCTC11064_01336) - 1307890..1308495 (-) 606 WP_106079392.1 GyrI-like domain-containing protein -
  FGK97_RS06490 (NCTC11064_01337) - 1308886..1310010 (+) 1125 WP_021001946.1 PTS sugar transporter subunit IIC -
  FGK97_RS06495 (NCTC11064_01338) - 1310086..1310535 (+) 450 WP_003023676.1 NUDIX hydrolase -
  FGK97_RS06500 (NCTC11064_01339) - 1310599..1310898 (+) 300 WP_003023675.1 DUF1827 family protein -

Sequence


Protein


Download         Length: 759 a.a.        Molecular weight: 84653.94 Da        Isoelectric Point: 5.2193

>NTDB_id=1127430 FGK97_RS06480 WP_021001944.1 1305567..1307846(+) (clpE) [Streptococcus anginosus strain NCTC11064]
MLCQNCKINESTIHLYTNVNGKQHQVDLCQNCYQIMKTDPNNALFRGMTNMNNQNNLDPFDDFFSNLGNFQNHQEPQTPP
TQSGGGYGNGGYGSNQGGSARQQAPQQPKGLLEEFGINVTEFARRGEIDPVIGRDEEIVRVIEILNRRTKNNPVLIGEPG
VGKTAVVEGLAQKIVDGDVPHKLQGKEVIRLDVVSLVQGTGIRGQFEERMQKLMNEIRSRQDVILFIDEIHEIVGAGSAG
DGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETITILKGIQKKYEDYHHVKYTDDAI
EAAAVLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLVEAENLKAQATRDEDFEKAAYFRDQIAKYKEMQ
QNKMVNQDTPIISEKTIEHIIEQKTNIPVGDLKEKEQSQLISLADDLKAHVIGQNDAVDKIAKAIRRNRVGLGTPNRPIG
SFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYEEAGQLTERVRRNPYSLILLDEI
EKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTSKVEANVGFGAAREGRTNSVLGELGNFFSPEFMNRFD
GIIEFKSLSKENLLQIVDLMLEDVNKRLAVNGIHLDVTDKVKEKLVNLGYDPKMGARPLRRTIQDHIEDAITDYYLEHPS
EKELKAVMTSNGKIVIKSAKKAENEADKEIQKPADNNAN

Nucleotide


Download         Length: 2280 bp        

>NTDB_id=1127430 FGK97_RS06480 WP_021001944.1 1305567..1307846(+) (clpE) [Streptococcus anginosus strain NCTC11064]
ATGCTTTGTCAAAATTGTAAAATAAATGAATCTACCATTCATCTTTACACGAATGTGAATGGAAAACAACACCAAGTTGA
CCTCTGTCAAAATTGTTATCAAATCATGAAAACAGACCCAAACAATGCCTTGTTTCGTGGAATGACCAATATGAATAATC
AAAACAACTTAGACCCTTTTGATGATTTCTTTAGCAATCTAGGGAATTTTCAAAATCATCAAGAACCACAAACCCCTCCG
ACTCAATCTGGAGGTGGTTACGGCAATGGAGGTTACGGTTCCAATCAAGGTGGGAGTGCACGCCAGCAAGCTCCGCAACA
GCCTAAAGGCCTCCTAGAAGAATTTGGTATCAATGTAACCGAATTTGCTCGGCGCGGTGAAATTGACCCTGTCATCGGTC
GTGATGAGGAAATCGTCCGCGTCATTGAAATTCTCAACCGTCGAACAAAGAACAATCCAGTCCTCATCGGAGAGCCTGGT
GTCGGTAAAACAGCAGTTGTCGAAGGCTTAGCTCAGAAAATTGTAGATGGAGATGTTCCACATAAACTCCAAGGCAAAGA
AGTCATTCGTTTAGATGTCGTTAGTTTGGTTCAAGGGACTGGAATCCGTGGTCAATTTGAAGAGCGAATGCAAAAACTCA
TGAACGAAATTCGCTCTCGACAAGATGTTATATTATTCATTGATGAAATTCACGAAATTGTTGGAGCTGGTTCTGCTGGC
GATGGAAATATGGATGCTGGAAATATCCTAAAACCAGCACTTGCTCGCGGTGAACTCCAATTAGTCGGTGCCACAACTCT
CAATGAATACCGGATTATCGAAAAAGATGCTGCACTGGAACGCCGTATGCAGCCTGTAAAAGTTGATGAACCAACAGTTG
AAGAAACGATCACTATCCTCAAAGGTATTCAAAAGAAATACGAAGACTATCACCACGTCAAATACACAGACGATGCCATT
GAAGCAGCAGCTGTCTTGTCCAATCGTTATATCCAAGATCGCTTCTTGCCTGATAAGGCCATTGACTTGCTAGACGAAGC
AGGCTCTAAGATGAATCTGACACTTAACTTTGTCGATCCAAAAGTCATTGATCAACGATTGGTAGAAGCTGAAAACCTCA
AGGCACAAGCTACTCGTGATGAAGATTTTGAAAAAGCTGCTTATTTCCGTGACCAAATTGCTAAATACAAAGAAATGCAG
CAAAATAAAATGGTAAACCAAGACACGCCTATCATCAGTGAAAAAACCATTGAACATATCATTGAGCAAAAAACAAATAT
CCCAGTTGGTGACTTAAAAGAAAAGGAACAATCGCAACTGATTAGTCTAGCCGATGATTTGAAAGCTCATGTCATTGGTC
AAAATGATGCTGTTGATAAAATTGCGAAGGCCATTCGCCGTAATCGAGTTGGACTAGGTACACCAAACCGACCAATTGGT
TCTTTCCTTTTTGTTGGGCCAACCGGTGTCGGCAAAACAGAACTTTCTAAACAACTAGCGATTGAGCTCTTTGGTTCAGC
TGACAGCATGATTCGTTTTGATATGAGTGAGTATATGGAAAAACATAGCGTAGCAAAACTCGTCGGAGCGCCTCCAGGTT
ACGTTGGCTACGAAGAAGCTGGACAATTAACAGAACGTGTACGTCGTAATCCTTATTCTCTCATTTTACTTGATGAAATA
GAAAAAGCTCACCCAGATGTTATGCACATGTTCCTGCAAGTTCTTGACGATGGACGACTGACAGACGGACAAGGGCGCAC
AGTTAGCTTTAAAGATACAATTATCATCATGACTTCTAACGCCGGTACTAGCAAGGTCGAAGCAAATGTTGGCTTTGGAG
CAGCGCGTGAAGGACGGACTAACTCTGTTCTTGGTGAATTGGGCAACTTCTTCAGCCCAGAATTTATGAATCGTTTCGAT
GGTATTATTGAGTTCAAATCTCTTAGCAAGGAAAATCTCCTACAAATCGTAGATTTGATGCTTGAAGATGTGAATAAACG
CTTAGCTGTAAATGGTATTCACCTAGACGTAACAGACAAAGTCAAGGAAAAATTAGTTAATCTTGGTTATGATCCAAAAA
TGGGAGCTCGTCCACTTCGCCGAACAATCCAAGATCACATCGAGGATGCTATCACCGACTACTACCTTGAACACCCAAGT
GAAAAAGAACTCAAGGCTGTCATGACAAGCAACGGTAAAATTGTCATCAAATCGGCTAAAAAAGCTGAAAATGAAGCCGA
CAAAGAAATCCAAAAACCAGCAGATAACAATGCTAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

87.919

98.155

0.863

  clpE Streptococcus pneumoniae D39

87.919

98.155

0.863

  clpE Streptococcus pneumoniae R6

87.919

98.155

0.863

  clpE Streptococcus pneumoniae TIGR4

87.785

98.155

0.862

  clpE Streptococcus mutans UA159

85.408

98.419

0.841

  clpC Lactococcus lactis subsp. cremoris KW2

75.789

100

0.759

  clpC Bacillus subtilis subsp. subtilis str. 168

51.642

88.274

0.456

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.84

82.345

0.394

  clpC Streptococcus pneumoniae Rx1

48.148

81.818

0.394

  clpC Streptococcus pneumoniae D39

48.148

81.818

0.394

  clpC Streptococcus pneumoniae TIGR4

47.987

81.818

0.393

  clpC Streptococcus mutans UA159

47.115

82.213

0.387

  clpC Streptococcus thermophilus LMD-9

46.72

82.345

0.385

  clpC Streptococcus thermophilus LMG 18311

46.635

82.213

0.383


Multiple sequence alignment