Detailed information NTG1127376

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FGK96_RS09980
• Genome accession: NZ_LR594036
• Coordinates: 2065771..2068212 (-)
• Length: 813 a.a.
• NCBI ID: WP_138083392.1
• Uniprot ID: -
• Organism: Streptococcus porcinus strain NCTC10710
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 2060771..2073212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGK96_RS09970 (NCTC10710_02061)	groL	2063668..2065296 (-)	1629	WP_138083390.1	chaperonin GroEL	-
FGK96_RS09975 (NCTC10710_02062)	groES	2065339..2065629 (-)	291	WP_138083391.1	co-chaperone GroES	-
FGK96_RS09980 (NCTC10710_02063)	clpC	2065771..2068212 (-)	2442	WP_138083392.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
FGK96_RS09985 (NCTC10710_02064)	-	2068212..2068673 (-)	462	WP_138083393.1	CtsR family transcriptional regulator	-
FGK96_RS09990	-	2068845..2069048 (-)	204	WP_003085753.1	cold-shock protein	-
FGK96_RS09995 (NCTC10710_02066)	-	2069396..2069665 (+)	270	WP_138083394.1	hypothetical protein	-
FGK96_RS10000 (NCTC10710_02067)	-	2069668..2071737 (+)	2070	WP_138083395.1	cation:proton antiporter	-
FGK96_RS10720	-	2072107..2072471 (+)	365	Protein_1931	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90431.95 Da
• Isoelectric Point: 5.9137

>NTDB_id=1127376 FGK96_RS09980 WP_138083392.1 2065771..2068212(-) (clpC) [Streptococcus porcinus strain NCTC10710]
MIDYSLKMQEIFKQAQYQAARFDSQYLETWHLLLAMVVVNNSLAGLVFNEFDDKVAIEEYEAAAILAMGQTPNDDVKEWT
LKGQSRTLTKILQFSDAIRQVTGAQEVGSEHVLFAILLNPDVMAARLLEMAGFKLRDEGQGELKISDLRKAIERQAAYSK
ETIKAIYELRKPKKSKAGGTFSDMMKPASSAGELSDFTRDLTQMASQGLLEPVIGRDKEITRMVQVLSRKTKNNPVLVGD
AGVGKTALAYGLAQRIVEGAIPYELQEMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIEADGKIILFVDELHTIMGSGS
GIDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSLEDAYQILLGLKSSYEMYHNVGISD
QAVKVAVKVAHRYLTSKNLPDSAIDLLDEASATVQGLIKKEAPSLLSPIDQAILDKDFKKVASLLKAGQKTKPNPTPVTE
DDIMATLSRLSGIPLEKISQADSQKYLRLEEELHKRVIGQDEAISAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVGKTE
LAKALAEVLFDDESALIRFDMSEYMEKFSASRLNGAPPGYVGYDEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQV
LDDGVLTDSRGRKVDFTNTIIIMTSNLGATALRDDKTVGFGVRDISHDHQAMEKRILEELKKTYRPEFINRIDEKVVFHS
LSQEDMQQVVRIMVKPLIATLKEKGITLKFQPSALKYLSEKGYDVEMGARPLRRTIQTEVEDKLSELLLSGQLSSGNKLK
VGLTKGKIKCDIE

Nucleotide

• Length: 2442 bp

>NTDB_id=1127376 FGK96_RS09980 WP_138083392.1 2065771..2068212(-) (clpC) [Streptococcus porcinus strain NCTC10710]
ATGATAGATTACTCACTTAAAATGCAAGAAATTTTCAAGCAGGCTCAATATCAAGCTGCACGCTTTGATAGCCAATATTT
AGAAACCTGGCATCTTCTTTTAGCAATGGTTGTGGTTAACAATTCACTCGCGGGACTTGTTTTCAATGAATTTGATGATA
AAGTTGCCATAGAAGAATATGAAGCGGCAGCTATTTTGGCTATGGGACAAACACCAAATGATGATGTGAAAGAATGGACT
TTAAAAGGTCAGTCTAGAACTTTAACAAAAATTCTCCAGTTTTCAGATGCTATCCGTCAAGTAACAGGTGCCCAGGAAGT
GGGATCGGAACACGTGCTTTTTGCAATATTATTGAACCCTGATGTGATGGCAGCACGTTTACTTGAAATGGCTGGTTTTA
AACTACGAGATGAGGGTCAAGGGGAGTTGAAAATCTCTGATTTACGTAAAGCAATTGAAAGACAGGCTGCCTATAGTAAA
GAGACTATTAAAGCTATTTATGAATTACGCAAACCTAAAAAATCAAAAGCAGGTGGGACCTTCTCAGATATGATGAAACC
GGCAAGTTCAGCAGGTGAACTTTCTGATTTCACACGTGACTTAACGCAGATGGCCAGTCAAGGACTTTTAGAACCGGTGA
TTGGTCGAGATAAAGAAATTACTCGGATGGTCCAGGTATTGAGCCGCAAGACCAAGAATAATCCGGTCTTAGTCGGAGAT
GCGGGTGTTGGGAAAACGGCTTTGGCGTATGGACTAGCTCAACGAATTGTCGAGGGGGCTATTCCCTACGAATTGCAGGA
GATGCGAGTTTTGGAATTGGACATGATGAGTGTGGTTGCAGGAACCCGTTTTCGTGGTGATTTTGAAGAGCGGATGAACC
AAATAATAGATGATATCGAAGCTGATGGGAAAATCATTCTTTTTGTTGATGAATTACATACGATTATGGGGTCTGGAAGT
GGTATCGATAGTACCTTAGATGCAGCTAATATCTTGAAACCAGCCTTGTCTCGTGGAACGCTACATATGGTAGGTGCAAC
AACTCAGGAAGAATATCAAAAACATATTGAAAAAGATGCAGCTCTATCTCGTCGTTTTGCTAAAATTTTAATTGAAGAAC
CAAGCCTTGAAGATGCTTACCAAATTCTTCTTGGTCTAAAATCTTCTTATGAGATGTATCATAATGTTGGTATTTCTGAT
CAGGCTGTCAAAGTGGCTGTTAAAGTTGCACATCGTTATTTAACTAGCAAAAACCTGCCAGATTCTGCTATAGACCTCTT
AGATGAGGCAAGTGCAACAGTTCAGGGACTAATCAAAAAAGAGGCTCCCTCCCTTTTAAGTCCTATTGATCAAGCTATCC
TAGATAAGGATTTTAAAAAGGTGGCTAGTCTGTTAAAGGCTGGTCAGAAAACAAAGCCCAACCCAACCCCAGTTACAGAA
GATGATATTATGGCAACTTTGAGTAGACTATCAGGCATACCGCTTGAGAAAATTAGCCAAGCTGATAGCCAAAAATACCT
TCGTTTAGAGGAAGAATTACACAAACGCGTTATTGGTCAAGACGAGGCTATTTCAGCTATTTCAAGGGCTATACGTCGTA
ACCAATCTGGTATTCGCACTGGCAAACGGCCAATTGGTTCATTTATGTTTCTAGGTCCCACAGGTGTTGGGAAAACAGAG
CTGGCGAAAGCCTTGGCTGAAGTTTTATTTGATGATGAATCAGCATTGATTCGTTTCGATATGTCAGAGTACATGGAAAA
ATTTTCAGCCAGTCGTCTTAATGGTGCTCCTCCAGGATATGTGGGCTATGACGAGGGTGGAGAATTGACAGAAAAAGTAA
GGAATAGGCCTTACTCCGTTTTGCTCTTTGATGAAGTTGAAAAAGCTCACCCAGATATTTTCAACGTTCTTCTTCAAGTT
TTGGATGACGGTGTGCTGACAGATTCCCGTGGTCGCAAAGTTGACTTCACGAATACTATTATTATCATGACCAGCAATTT
AGGTGCGACAGCACTTCGAGATGATAAGACTGTAGGTTTTGGTGTTAGAGATATTAGTCACGATCACCAAGCTATGGAAA
AACGGATTTTAGAAGAACTAAAGAAAACTTATCGTCCTGAATTTATTAATCGAATTGATGAAAAGGTTGTTTTCCACAGT
TTAAGTCAAGAAGATATGCAACAAGTAGTTAGGATTATGGTGAAACCATTAATTGCTACCCTAAAAGAAAAGGGAATTAC
TCTAAAATTCCAACCGTCTGCACTTAAATACCTATCTGAAAAAGGTTATGATGTTGAAATGGGGGCTCGTCCTCTTCGAA
GAACGATTCAAACAGAAGTTGAGGATAAATTGTCAGAGCTACTCCTTTCGGGACAGTTATCTTCTGGAAATAAATTAAAA
GTTGGTTTAACCAAAGGCAAAATAAAATGTGACATAGAATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-801)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-51)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (101-134)

• AAA lid domain (AAA_lid_9) (375-453)

• ATPase family associated with various cellular activities (AAA) (AAA) (236-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	73.924	100	0.739
clpC	Streptococcus thermophilus LMG 18311	72.727	100	0.728
clpC	Streptococcus thermophilus LMD-9	72.604	100	0.727
clpC	Streptococcus pneumoniae TIGR4	65.314	100	0.653
clpC	Streptococcus pneumoniae Rx1	65.314	100	0.653
clpC	Streptococcus pneumoniae D39	65.314	100	0.653
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.144	100	0.494
clpC	Bacillus subtilis subsp. subtilis str. 168	44.765	100	0.458
clpE	Streptococcus pneumoniae Rx1	46.13	79.459	0.367
clpE	Streptococcus pneumoniae D39	46.13	79.459	0.367
clpE	Streptococcus pneumoniae R6	46.13	79.459	0.367
clpE	Streptococcus pneumoniae TIGR4	46.13	79.459	0.367