Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGK96_RS09665 Genome accession   NZ_LR594036
Coordinates   1997539..1998906 (-) Length   455 a.a.
NCBI ID   WP_138083342.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1992539..2003906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS09650 (NCTC10710_01993) - 1993325..1994671 (-) 1347 WP_138083339.1 GHKL domain-containing protein -
  FGK96_RS09655 (NCTC10710_01994) gltX 1995051..1996496 (-) 1446 WP_138083340.1 glutamate--tRNA ligase -
  FGK96_RS09660 (NCTC10710_01995) - 1996884..1997384 (-) 501 WP_138083341.1 beta-class carbonic anhydrase -
  FGK96_RS09665 (NCTC10710_01996) radA 1997539..1998906 (-) 1368 WP_138083342.1 DNA repair protein RadA Machinery gene
  FGK96_RS09670 (NCTC10710_01997) - 1998933..1999379 (-) 447 WP_138083343.1 dUTP diphosphatase -
  FGK96_RS09675 (NCTC10710_01998) - 1999500..1999859 (-) 360 WP_138083344.1 YbaN family protein -
  FGK96_RS09680 (NCTC10710_01999) - 2000040..2000642 (+) 603 WP_003084465.1 NADPH-dependent FMN reductase -
  FGK96_RS09685 (NCTC10710_02000) - 2000660..2001904 (+) 1245 WP_138083345.1 NAD(P)H-dependent oxidoreductase -
  FGK96_RS09690 (NCTC10710_02001) - 2001946..2002731 (-) 786 WP_138083346.1 epoxyqueuosine reductase QueH -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49757.08 Da        Isoelectric Point: 5.7873

>NTDB_id=1127375 FGK96_RS09665 WP_138083342.1 1997539..1998906(-) (radA) [Streptococcus porcinus strain NCTC10710]
MAKKKATFVCQECGYHSPKYLGRCPNCSAWSSFVEEVEVQELKNARVSLTGEKSRPVKLKDVDNLNYSRTQTNMDEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQEIRIEIE
KIQPDFLIIDSIQTIMSPDSSGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVINPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKAAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIHVPKNALQGLDIPKNIEVVGVSTVGEVLKAVFSKA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1127375 FGK96_RS09665 WP_138083342.1 1997539..1998906(-) (radA) [Streptococcus porcinus strain NCTC10710]
ATGGCTAAGAAAAAAGCAACATTTGTCTGTCAGGAATGTGGTTATCACTCTCCCAAATATCTAGGACGTTGTCCCAATTG
TTCAGCCTGGTCTTCATTTGTAGAGGAAGTTGAAGTCCAAGAGCTTAAGAATGCGCGTGTTAGCCTAACGGGTGAAAAGA
GTCGCCCTGTAAAGCTAAAAGATGTTGATAATCTTAATTATTCCCGTACTCAGACCAACATGGATGAATTTAATCGAGTT
CTTGGTGGAGGAGTCGTTCCAGGTAGCCTTATCCTGATTGGTGGAGATCCGGGGATTGGGAAGTCAACCTTACTCTTGCA
AGTTTCGACTCAGTTGGCTAATAAAGGAACAGTTTTATATGTGTCTGGAGAAGAGTCGGCAGAACAGATAAAATTGCGAA
GTGAACGTTTAGGGGAGATTGATAATGAATTCTATCTCTACGCCGAGACCAACATGCAAGAGATTAGGATTGAGATTGAG
AAAATTCAACCTGATTTTTTAATTATTGATTCCATTCAAACCATTATGAGTCCTGATAGCTCAGGTGTTCAAGGGTCTGT
TAGTCAAGTTAGAGAAGTAACAGCGGAACTCATGCAATTAGCGAAGACTAATAATATTGCGACCTTTATAGTTGGGCACG
TTACTAAAGAAGGAACCATAGCAGGACCAAGAATGTTGGAACATATGGTGGATACAGTCCTCTATTTTGAAGGTGAACGT
CATCATACCTTTAGAATTTTAAGGGCTGTTAAAAATCGTTTTGGCTCGACCAATGAAATTGGTATTTTTGAAATGCAATC
AGGTGGGCTGGTTGAGGTTATTAATCCTAGTCAAGTTTTCCTAGAGGAACGCTTAGACGGTGCCACAGGTTCAGCTATTG
TGGTCACTATGGAAGGTAGTCGCCCGATTTTAGCAGAGGTTCAATCTTTAGTAACCCCAACTGTTTTTGGTAATGCTAGG
AGGACAACAACAGGGCTAGATTTCAATCGAGTTAGTTTGATTATGGCTGTTTTAGAAAAGCGCTGTGGTTTGCTGCTACA
GAATCAGGATGCCTATTTGAAAGCTGCTGGAGGCGTTAAGTTAGATGAGCCGGCTATTGACTTAGCTGTGGCTGTGGCCA
TTGCTTCAAGTTATAAGGAACTGCCAACCAATCCTCAAGAGGCCTTTCTAGGAGAAATTGGTTTGACGGGTGAGATTAGA
CGGGTGACTCGTATTGAACAAAGAATTAATGAAGCAGCTAAGCTTGGATTCACCAAGATTCATGTCCCTAAAAATGCTTT
ACAAGGGTTAGATATTCCTAAAAATATAGAAGTTGTTGGTGTATCCACGGTAGGAGAGGTTCTTAAAGCTGTTTTCTCTA
AAGCTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(55-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

85.651

99.56

0.853
  radA Streptococcus pneumoniae D39

85.651

99.56

0.853
  radA Streptococcus pneumoniae R6

85.651

99.56

0.853
  radA Streptococcus pneumoniae TIGR4

85.651

99.56

0.853
  radA Streptococcus mitis NCTC 12261

85.651

99.56

0.853
  radA Streptococcus mitis SK321

85.43

99.56

0.851
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

99.56

0.609

Multiple sequence alignment