Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG36_RS07725 Genome accession   NZ_CP009472
Coordinates   1616141..1617808 (-) Length   555 a.a.
NCBI ID   WP_038601474.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1611141..1622808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS07695 (LG36_1472) - 1611545..1611925 (-) 381 WP_003131357.1 cell division protein FtsL -
  LG36_RS07700 (LG36_1473) rsmH 1612090..1613043 (-) 954 WP_080739867.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  LG36_RS07705 (LG36_1474) - 1613277..1614203 (-) 927 WP_038601468.1 DUF805 domain-containing protein -
  LG36_RS07710 (LG36_1475) - 1614227..1614748 (-) 522 WP_038601470.1 DUF805 domain-containing protein -
  LG36_RS07715 (LG36_1476) - 1614846..1615412 (-) 567 WP_038601472.1 TMEM175 family protein -
  LG36_RS07725 (LG36_1477) recN 1616141..1617808 (-) 1668 WP_038601474.1 DNA repair protein RecN Machinery gene
  LG36_RS07730 (LG36_1478) - 1617957..1618403 (-) 447 WP_038601476.1 arginine repressor -
  LG36_RS07735 (LG36_1479) - 1618400..1619206 (-) 807 WP_038601477.1 TlyA family RNA methyltransferase -
  LG36_RS07740 (LG36_1480) - 1619289..1619783 (-) 495 WP_038601479.1 GNAT family N-acetyltransferase -
  LG36_RS07745 (LG36_1481) - 1619784..1620641 (-) 858 WP_038601480.1 polyprenyl synthetase family protein -
  LG36_RS07750 (LG36_1482) - 1620722..1621879 (-) 1158 WP_038601481.1 glycerate kinase -
  LG36_RS07755 (LG36_1483) - 1622028..1622267 (-) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62803.07 Da        Isoelectric Point: 4.6498

>NTDB_id=112734 LG36_RS07725 WP_038601474.1 1616141..1617808(-) (recN) [Lactococcus lactis strain AI06]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGATKAEIEGLFFFDKTPELKAVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDAIKD
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLVNRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSEKDSENLENSVKVAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTDDITTSTVRKLNFDERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=112734 LG36_RS07725 WP_038601474.1 1616141..1617808(-) (recN) [Lactococcus lactis strain AI06]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGTGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGGGCGTGCTTCGAGTGATT
TTGTGCGGCATGGGGCAACCAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGGCGGTACTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAAATTTTTGCCAATGGTCGCTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGATGAAGCCTTTGATGCGATAAAAGAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATCCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAG
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCCTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACCACAATGACAGAACTGGATAAAATTAGTAACTTTGATAATGACTA
TCAAGAACTTGCTGACAAGACCGCTGAAAGCTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCGGAACTTTTACAAATTGAAGACCGGATTATGACCTTGACTACTTTGAAGAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAACTGACGGGTTCAGAAAAGGACTC
AGAAAATCTAGAAAATTCAGTTAAAGTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTTAATGAAGCGCGCCATA
AAATTGCAAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAGTTTTCGGCAAATGGAAATGAGCATGTTGAATTCTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCACTGGCAAAAACGGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCTATAAAATCAAGCTTTTCAAGACGCGAAA
ATAAAACAGCCATTGTTTTTGACGAGGTTGACACTGGTGTTTCTGGCCGTGTTGCTCAAGCGATTGCTAATAAAATATAT
AAAATTGCGAGACATGGGCAAGTTCTTGCAATTTCTCATCTTCCACAAGTTGTGGCCATTGCCGACAGACAATTTTATAT
TGAAAAAGCTTCAACCGATGACATTACTACTTCCACAGTTAGAAAATTAAACTTTGACGAACGAGTTAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCTTTGGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.182

100

0.445

Multiple sequence alignment