Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FGL04_RS10255 Genome accession   NZ_LR594035
Coordinates   1986152..1986865 (+) Length   237 a.a.
NCBI ID   WP_138069082.1    Uniprot ID   A0A4U9ZQ53
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1981152..1991865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS10245 (NCTC5385_02217) treC 1982243..1983874 (-) 1632 WP_138069080.1 alpha,alpha-phosphotrehalase -
  FGL04_RS10250 (NCTC5385_02218) treP 1983940..1985934 (-) 1995 WP_138069081.1 PTS system trehalose-specific EIIBC component -
  FGL04_RS10255 (NCTC5385_02219) treR 1986152..1986865 (+) 714 WP_138069082.1 trehalose operon repressor Regulator
  FGL04_RS10260 (NCTC5385_02220) yaaA 1986998..1987729 (+) 732 WP_138069083.1 peroxide stress protein YaaA -
  FGL04_RS10265 (NCTC5385_02221) nrdG 1987850..1988464 (-) 615 WP_138069084.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  FGL04_RS10270 (NCTC5385_02222) - 1988471..1988974 (-) 504 WP_138069085.1 GNAT family N-acetyltransferase -
  FGL04_RS10275 (NCTC5385_02223) - 1988985..1989922 (-) 938 Protein_2001 Gfo/Idh/MocA family protein -
  FGL04_RS10800 (NCTC5385_02224) - 1989944..1990096 (-) 153 WP_007893810.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27546.88 Da        Isoelectric Point: 9.4542

>NTDB_id=1127321 FGL04_RS10255 WP_138069082.1 1986152..1986865(+) (treR) [Streptococcus pseudoporcinus strain NCTC5385]
MKKYDYIFKDLESKISKGVYAIDDFLPTEFQLSKEYNASRDTIRKALTLLVKDGLVKKQQGRGTQVIKHHQILFPISELT
SYHELVTYFNMDSKTNVIAIDKLIVDADMLKLTGFPLHSILWRITRQRVVDGIASVLDIDYLSKDIVPTISREIAEKSLY
HYLEKDLNLAIDFALKEVTIDQVNDKDKILLDLGSDRHLVSVKSKVYLSSNEQFQFTESRHKLEKFKFVDFARRKPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1127321 FGL04_RS10255 WP_138069082.1 1986152..1986865(+) (treR) [Streptococcus pseudoporcinus strain NCTC5385]
ATGAAGAAGTATGACTATATATTTAAAGATTTAGAATCAAAAATATCCAAAGGAGTTTACGCTATTGATGATTTTTTACC
AACTGAATTCCAATTAAGCAAAGAATACAATGCTAGTCGTGACACCATTCGCAAAGCTTTAACTCTCTTAGTTAAAGATG
GCTTAGTCAAAAAACAACAAGGTCGAGGAACACAAGTTATTAAACATCATCAGATTCTTTTTCCCATTTCAGAGTTAACA
AGCTATCATGAGTTAGTTACCTACTTTAATATGGACTCTAAAACCAATGTGATTGCTATTGACAAGTTAATTGTGGATGC
TGATATGTTAAAATTGACAGGATTTCCTCTCCATTCCATTCTTTGGCGAATCACTCGCCAAAGGGTTGTTGACGGTATTG
CCTCTGTTCTGGATATCGACTACCTTAGTAAAGATATTGTACCAACTATCAGTCGTGAAATTGCTGAAAAATCCCTTTAC
CACTACCTAGAAAAAGACCTCAACTTAGCCATTGATTTTGCCTTAAAAGAAGTCACCATTGATCAAGTCAATGACAAAGA
TAAAATTTTACTAGATTTAGGCTCAGATCGTCACCTTGTTTCCGTTAAATCAAAAGTCTACCTCTCATCTAATGAACAAT
TCCAGTTTACTGAGAGTCGTCATAAGTTAGAAAAATTTAAATTTGTGGATTTTGCACGACGTAAACCCAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(92-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9ZQ53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.103

98.734

0.633

Multiple sequence alignment