Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL04_RS07165 Genome accession   NZ_LR594035
Coordinates   1384158..1385960 (-) Length   600 a.a.
NCBI ID   WP_138068707.1    Uniprot ID   A0A4U9YUZ9
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1379158..1390960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS07150 (NCTC5385_01559) prsA 1381561..1382502 (-) 942 WP_138068705.1 peptidylprolyl isomerase PrsA -
  FGL04_RS07155 (NCTC5385_01560) - 1382565..1383272 (-) 708 WP_171011252.1 O-methyltransferase -
  FGL04_RS07160 (NCTC5385_01561) - 1383440..1384081 (-) 642 WP_138068706.1 HAD family hydrolase -
  FGL04_RS07165 (NCTC5385_01562) pepF 1384158..1385960 (-) 1803 WP_138068707.1 oligoendopeptidase F Regulator
  FGL04_RS11060 (NCTC5385_01563) - 1385960..1386265 (-) 306 WP_225247804.1 hypothetical protein -
  FGL04_RS11065 (NCTC5385_01564) - 1386476..1386919 (-) 444 WP_225247805.1 competence protein CoiA -
  FGL04_RS07175 (NCTC5385_01565) - 1386983..1388128 (-) 1146 WP_138068708.1 MFS transporter -
  FGL04_RS07180 (NCTC5385_01566) - 1388223..1388939 (-) 717 WP_138068709.1 pseudouridine synthase -
  FGL04_RS07185 (NCTC5385_01567) nagB 1389006..1389716 (-) 711 WP_138068710.1 glucosamine-6-phosphate deaminase -
  FGL04_RS07190 (NCTC5385_01568) queA 1389890..1390918 (+) 1029 WP_138068711.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69695.91 Da        Isoelectric Point: 4.7553

>NTDB_id=1127302 FGL04_RS07165 WP_138068707.1 1384158..1385960(-) (pepF) [Streptococcus pseudoporcinus strain NCTC5385]
MADNRSHLEEKYTWDLTTIFDSDQRWQAEVNDLKIDLEKAQTLAGHLLDSAKNLLETTEIQLDLSRRIEKVYVYAHMKND
QDTTVAKYQEYQSKASALYARLSEVFSFYEPEFMTILPSQFDNFLKEEPRLEDYHHFFEKLLKNKEHVLSQAEEELLAGA
QEIFNGAEETFGLLDNADIQFPIIKGEKGQEIEITHGNFIHLMESKDRQVRQAAYEALYSTYEQFQHTYAKTLQTNVKVN
NYKARVHHYTSARQAAMVANFIPETVYDTLLEVVNRKLPLLHQYLELRKKILGLETLKMYDVYTPLSQTDLSVNYDQALE
KAEEVLSIFGKEYSDYVHQAFSERWIDVHVNKGKISGAYSGGSYDTKAFMLLNWQGNLDNLYTLVHETGHSLHSTLTRKN
QPYVYGDYSIFLAEIASTTNENILTEALLKDVTDEKERFAILNNYLDGFRGTIFRQSQFAEFEHAIYQADQAGDVLTSDY
LNNLYGQLNEKYYGLAKEDNYYIQYEWARIPHFYYNYYVYQYATGFAAASYLANKIVHGQQKDIDNYLSYLKAGNSDYPL
NVIAKAGVDMTNEVYLEDAFTIFEERLTDLEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1127302 FGL04_RS07165 WP_138068707.1 1384158..1385960(-) (pepF) [Streptococcus pseudoporcinus strain NCTC5385]
ATGGCAGATAATAGAAGTCATTTAGAAGAAAAATACACATGGGATTTGACTACTATCTTTGACAGTGATCAAAGATGGCA
AGCGGAAGTTAATGACTTAAAAATAGATCTAGAAAAAGCTCAGACTTTAGCTGGACACCTTTTAGATTCAGCAAAAAATT
TATTGGAAACAACAGAAATCCAGTTGGATTTATCAAGACGTATTGAAAAGGTCTATGTCTACGCTCACATGAAAAACGAC
CAAGATACGACTGTTGCAAAATACCAGGAATACCAATCAAAAGCATCCGCTTTATATGCAAGGCTTAGTGAAGTTTTTTC
ATTTTATGAGCCAGAATTTATGACTATTCTTCCAAGCCAATTTGACAATTTTCTTAAGGAAGAACCTAGGTTGGAAGATT
ATCATCATTTCTTTGAAAAGCTTCTTAAAAATAAAGAACATGTTCTTAGTCAAGCTGAGGAGGAATTATTAGCTGGTGCT
CAAGAAATTTTTAATGGTGCTGAAGAGACCTTTGGTCTCTTAGACAATGCTGATATTCAATTTCCAATTATCAAAGGTGA
AAAAGGACAAGAGATTGAAATTACGCACGGTAATTTTATCCATTTGATGGAATCTAAAGATCGTCAAGTGCGTCAAGCTG
CTTATGAAGCCTTATACAGTACTTATGAGCAATTTCAACATACTTATGCTAAAACACTTCAAACCAATGTTAAAGTAAAC
AATTATAAGGCGCGTGTTCATCATTATACGTCTGCTCGTCAAGCAGCTATGGTCGCAAACTTTATTCCTGAAACAGTTTA
CGATACTCTTTTAGAAGTTGTTAACCGTAAGCTCCCATTACTGCATCAGTATTTAGAGTTAAGAAAAAAAATATTAGGTC
TAGAGACCTTAAAAATGTATGATGTCTATACACCCTTATCTCAAACCGACCTATCTGTCAATTATGATCAAGCTTTGGAA
AAAGCCGAGGAAGTCTTATCTATTTTCGGAAAAGAGTATAGTGATTATGTTCATCAAGCTTTTTCGGAAAGATGGATTGA
TGTCCATGTTAATAAAGGAAAAATATCTGGTGCTTATTCAGGTGGGTCTTACGATACCAAAGCCTTTATGCTATTAAATT
GGCAGGGTAATTTAGATAACCTCTATACTTTGGTGCATGAAACGGGCCATAGTTTACATTCAACTTTAACACGTAAGAAC
CAACCTTATGTTTATGGAGATTACAGTATATTTTTGGCAGAGATTGCTTCAACGACGAATGAAAACATTTTAACTGAGGC
ATTATTGAAAGATGTTACAGATGAAAAAGAACGCTTTGCTATTCTAAATAATTATTTAGATGGCTTTAGAGGAACTATTT
TCCGCCAAAGTCAATTTGCTGAATTTGAGCATGCTATTTATCAGGCTGACCAAGCTGGTGACGTCTTAACAAGTGATTAT
TTAAATAACTTGTATGGACAATTGAATGAAAAATATTATGGTTTAGCCAAGGAAGACAACTACTATATTCAATATGAATG
GGCGCGGATTCCTCACTTCTATTACAATTACTACGTTTATCAATATGCAACAGGTTTTGCGGCGGCAAGCTATCTAGCAA
ATAAAATTGTTCATGGGCAACAAAAGGATATTGATAACTATCTGTCTTATCTTAAAGCCGGGAATTCTGATTACCCATTG
AATGTTATAGCAAAAGCCGGAGTGGATATGACTAACGAAGTTTATTTAGAAGATGCCTTTACTATTTTTGAAGAACGTCT
TACAGATTTAGAGGCTCTAGTTGAGAAGGGGGTCCATCTCTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9YUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697

Multiple sequence alignment