Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   FGL04_RS02380 Genome accession   NZ_LR594035
Coordinates   422252..422977 (+) Length   241 a.a.
NCBI ID   WP_007892113.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 417252..427977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS02350 (NCTC5385_00495) tsaE 417919..418362 (+) 444 WP_138068104.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FGL04_RS02355 (NCTC5385_00496) - 418355..418879 (+) 525 WP_138068105.1 GNAT family N-acetyltransferase -
  FGL04_RS02360 (NCTC5385_00497) brpA 418887..420200 (+) 1314 WP_138068106.1 biofilm formation/cell division transcriptional regulator BrpA -
  FGL04_RS02365 tnpA 420449..420906 (+) 458 Protein_444 IS200/IS605 family transposase -
  FGL04_RS02370 (NCTC5385_00499) - 421113..421397 (-) 285 WP_138068107.1 chemotaxis protein -
  FGL04_RS02375 (NCTC5385_00500) - 421394..421813 (-) 420 WP_138068108.1 HIT family protein -
  FGL04_RS02380 (NCTC5385_00501) pptA 422252..422977 (+) 726 WP_007892113.1 ABC transporter ATP-binding protein Regulator
  FGL04_RS02385 (NCTC5385_00502) - 422980..424014 (+) 1035 WP_138068109.1 ABC transporter permease -
  FGL04_RS02390 (NCTC5385_00503) ccrZ 424075..424866 (+) 792 WP_003084957.1 cell cycle regulator CcrZ -
  FGL04_RS02395 (NCTC5385_00504) trmB 424866..425501 (+) 636 WP_007892080.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FGL04_RS02405 (NCTC5385_00506) rimP 425776..426273 (+) 498 WP_050784973.1 ribosome maturation factor RimP -
  FGL04_RS02410 (NCTC5385_00507) nusA 426335..427489 (+) 1155 WP_138068110.1 transcription termination factor NusA -
  FGL04_RS02415 (NCTC5385_00508) rnpM 427505..427801 (+) 297 WP_007896233.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26680.99 Da        Isoelectric Point: 4.5347

>NTDB_id=1127285 FGL04_RS02380 WP_007892113.1 422252..422977(+) (pptA) [Streptococcus pseudoporcinus strain NCTC5385]
MLKIENLTGGYINIPVLKDITFSVDNGQLVGLIGLNGAGKSTTINEIIGLLRPYKGSIKIDGVSLEEDPAAYRKKIGFIP
ETPSLYEELTLAEHIETIAMAYDIEVSEALERAQPLLKTYRLLDRLDWYPSQFSKGMKQKVMIICAFIIDPSLFILDEPF
LGLDPLAISDLIAYLEVEKEKGKSILMSTHVLDSAEKMCDAFVILHQGEIRAQGTLSDLRATFGNPKASLNDIYLALTTE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1127285 FGL04_RS02380 WP_007892113.1 422252..422977(+) (pptA) [Streptococcus pseudoporcinus strain NCTC5385]
ATGCTAAAAATTGAAAATTTAACAGGGGGATATATTAATATTCCTGTTCTAAAAGATATCACTTTCTCAGTTGATAATGG
GCAGTTGGTTGGTTTAATTGGCTTAAATGGTGCTGGAAAATCGACTACTATTAATGAAATTATCGGACTCTTACGACCTT
ATAAGGGCTCAATAAAAATTGATGGGGTAAGTTTGGAAGAAGATCCGGCTGCTTATCGTAAGAAAATTGGATTTATTCCA
GAAACACCAAGTTTATATGAAGAATTGACTTTAGCAGAACATATTGAAACCATAGCTATGGCTTATGATATAGAGGTGTC
AGAAGCTCTTGAACGTGCACAGCCTTTACTCAAGACCTATCGTTTGTTAGATCGTTTAGATTGGTATCCAAGCCAGTTCT
CAAAAGGAATGAAACAAAAGGTGATGATTATTTGTGCTTTTATTATTGATCCTAGTCTCTTCATTCTAGATGAACCCTTC
TTGGGCCTTGATCCTTTAGCTATATCGGATTTAATTGCTTATTTAGAAGTTGAGAAAGAAAAAGGGAAGTCCATTTTAAT
GAGTACTCATGTCCTTGATTCAGCAGAAAAAATGTGTGATGCTTTTGTAATTCTACATCAGGGAGAGATAAGAGCTCAAG
GGACCCTATCTGATTTACGAGCAACTTTTGGAAATCCAAAAGCCAGCTTGAATGATATCTATCTAGCGTTAACAACAGAG
GTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.109

98.755

0.722
  pptA Streptococcus thermophilus LMD-9

73.109

98.755

0.722

Multiple sequence alignment