Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGL04_RS01000 Genome accession   NZ_LR594035
Coordinates   171601..172974 (+) Length   457 a.a.
NCBI ID   WP_138067899.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 166601..177974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS00975 (NCTC5385_00203) - 167773..168558 (+) 786 WP_138067896.1 epoxyqueuosine reductase QueH -
  FGL04_RS00980 (NCTC5385_00204) - 168600..169847 (-) 1248 Protein_159 NAD(P)H-dependent oxidoreductase -
  FGL04_RS00985 (NCTC5385_00206) - 169866..170468 (-) 603 WP_138067897.1 NADPH-dependent FMN reductase -
  FGL04_RS00990 (NCTC5385_00207) - 170648..171007 (+) 360 WP_138067898.1 YbaN family protein -
  FGL04_RS00995 (NCTC5385_00208) - 171128..171574 (+) 447 WP_007892289.1 dUTP diphosphatase -
  FGL04_RS01000 (NCTC5385_00209) radA 171601..172974 (+) 1374 WP_138067899.1 DNA repair protein RadA Machinery gene
  FGL04_RS01005 (NCTC5385_00210) - 173096..173566 (+) 471 WP_138067900.1 beta-class carbonic anhydrase -
  FGL04_RS01010 (NCTC5385_00211) gltX 173953..175398 (+) 1446 WP_138067901.1 glutamate--tRNA ligase -
  FGL04_RS01015 (NCTC5385_00212) - 175761..177107 (+) 1347 WP_138067902.1 GHKL domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50043.33 Da        Isoelectric Point: 5.5895

>NTDB_id=1127279 FGL04_RS01000 WP_138067899.1 171601..172974(+) (radA) [Streptococcus pseudoporcinus strain NCTC5385]
MAKKKATFVCQECGYHSPKYLGRCPNCSAWSSFVEEVEVQELKNARVSLTGEKSRPVKLKDVDNLNYSRTQTNMDEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQEIRIEIE
KIQPDFLIIDSIQTIMSPDSSGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVTNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKAAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGLDIPQNIEVVGLSTVGEVLKAVFTKNTK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1127279 FGL04_RS01000 WP_138067899.1 171601..172974(+) (radA) [Streptococcus pseudoporcinus strain NCTC5385]
ATGGCTAAGAAAAAAGCAACATTTGTTTGTCAGGAATGTGGGTATCACTCTCCTAAATATTTAGGGCGTTGTCCCAACTG
CTCAGCCTGGTCTTCATTTGTGGAGGAAGTTGAAGTCCAAGAACTTAAAAATGCGCGTGTTAGCCTAACGGGTGAAAAAA
GTCGCCCGGTGAAACTAAAAGACGTTGATAACCTCAATTATTCCCGTACTCAGACCAACATGGATGAATTTAATCGAGTT
CTTGGCGGAGGTGTCGTTCCTGGCAGTCTTATCCTGATAGGAGGAGATCCTGGGATTGGTAAATCAACCTTACTCTTGCA
AGTTTCGACCCAGTTGGCCAATAAAGGAACTGTTTTATACGTTTCTGGGGAAGAATCAGCAGAACAAATTAAGTTGCGTA
GTGAACGTCTAGGTGAGATTGATAATGAATTTTATCTCTACGCCGAGACCAATATGCAAGAAATTAGAATTGAGATTGAG
AAAATTCAACCTGATTTCCTGATTATTGATTCTATTCAAACCATTATGAGTCCGGATAGTTCAGGTGTCCAAGGGTCAGT
TAGTCAGGTAAGAGAAGTAACAGCGGAACTCATGCAATTAGCTAAGACTAATAATATTGCGACCTTTATAGTTGGACATG
TTACTAAAGAAGGAACCATAGCGGGTCCAAGAATGCTGGAGCATATGGTGGATACAGTTCTTTATTTTGAAGGGGAACGT
CATCATACCTTTAGGATTTTGCGAGCTGTTAAAAATCGTTTTGGATCAACTAATGAAATTGGTATTTTTGAAATGCAATC
AGGTGGTCTGGTTGAAGTTACTAATCCCAGTCAAGTTTTCCTAGAGGAACGCTTAGATGGGGCCACAGGCTCAGCTATCG
TTGTTACCATGGAAGGGAGTCGACCAATTTTAGCCGAGGTCCAATCTTTAGTCACGCCAACTGTTTTTGGTAATGCCCGA
AGAACAACAACAGGGCTAGATTTCAATCGAGTTAGTTTAATTATGGCTGTTTTGGAAAAACGCTGTGGTTTGCTGTTACA
GAATCAGGATGCCTATCTGAAGGCCGCTGGAGGTGTCAAATTAGATGAGCCCGCTATTGACTTGGCTGTTGCAGTTGCCA
TTGCTTCAAGTTATAAGGAGTTGCCAACCAACCCTCAAGAAGCCTTTCTAGGAGAAATTGGTTTGACGGGTGAGATTAGA
CGGGTGACCCGCATTGAACAAAGGATTAATGAGGCAGCTAAGCTTGGCTTCACCAAGATTTATGCCCCTAAAAACGCCTT
ACAAGGGTTAGATATCCCTCAAAATATAGAAGTTGTTGGTCTATCAACTGTAGGTGAGGTTCTTAAAGCTGTCTTTACTA
AAAATACCAAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(55-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

85.398

98.906

0.845
  radA Streptococcus pneumoniae D39

85.398

98.906

0.845
  radA Streptococcus pneumoniae R6

85.398

98.906

0.845
  radA Streptococcus pneumoniae TIGR4

85.398

98.906

0.845
  radA Streptococcus mitis NCTC 12261

85.398

98.906

0.845
  radA Streptococcus mitis SK321

85.398

98.906

0.845
  radA Bacillus subtilis subsp. subtilis str. 168

60.706

99.125

0.602

Multiple sequence alignment