Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FGL00_RS01790 Genome accession   NZ_LR594034
Coordinates   339856..340782 (+) Length   308 a.a.
NCBI ID   WP_003049687.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 334856..345782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL00_RS01780 (NCTC8546_00368) amiA 336318..338288 (+) 1971 WP_110408040.1 peptide ABC transporter substrate-binding protein Regulator
  FGL00_RS01785 (NCTC8546_00369) amiC 338354..339856 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  FGL00_RS01790 (NCTC8546_00370) amiD 339856..340782 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  FGL00_RS01795 (NCTC8546_00371) amiE 340791..341861 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  FGL00_RS01800 (NCTC8546_00372) amiF 341854..342777 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  FGL00_RS01805 (NCTC8546_00373) - 342805..343791 (-) 987 WP_138098238.1 IS30-like element IS1239 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34888.93 Da        Isoelectric Point: 9.2024

>NTDB_id=1127227 FGL00_RS01790 WP_003049687.1 339856..340782(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
METIDKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1127227 FGL00_RS01790 WP_003049687.1 339856..340782(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
ATGGAAACGATTGATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTGACCATCT
TATTGATGAGTTTTATTTACCCAATGTTTGCGAACTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TATATTTGGCCCAACGCCGAATATTGGTTTGGAACAGATAAAAACGGACAATCTTTGTTTGATGGTGTTTGGTATGGAGC
GCGTAATTCTATCTTAATTTCTGTTATAGCAACATTGATTAATGTGACTATCGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATTATCATTGTT
TTGACCTATTCATTAGGTGCTGGTTTTTGGAATTTGATTTTAGCTTTCTGTATCACTGGATGGATCGGTGTAGCTTACTC
TATCCGTGTGCAAATCTTACGTTACCGTGATTTGGAGTACAACCTTGCTAGCCAAACCCTAGGAACACCAATGTACAAAA
TTGCCATTAAGAACCTCTTGCCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTGTACGTGTCT
TCTGAGGCTTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACGACTCCAAGCTTAGGGCGTTTGATTGCTAATTATTC
TAGCAACTTAACAACAAATGCTTACCTCTTCTGGATTCCCTTAGTAACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCCAGCGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.052

100

0.731
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment