Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   FGK99_RS09985 Genome accession   NZ_LR594033
Coordinates   2085374..2086147 (+) Length   257 a.a.
NCBI ID   WP_043031676.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2080374..2091147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS09975 (NCTC4675_02028) rlmH 2083342..2083821 (-) 480 WP_012678751.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FGK99_RS09980 (NCTC4675_02029) htrA 2084031..2085254 (+) 1224 WP_012516520.1 S1C family serine protease Regulator
  FGK99_RS09985 (NCTC4675_02030) spo0J 2085374..2086147 (+) 774 WP_043031676.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29165.78 Da        Isoelectric Point: 9.7975

>NTDB_id=1127211 FGK99_RS09985 WP_043031676.1 2085374..2086147(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MTEILMHIPIEDIVANPYQPRLQFNQKELEELAHSIQANGLIQPIIVRKSDVFGYELVAGERRFKAAKLAGLQKIPAIVK
EISTLESMQQAIVENLQRSNLNAIEEAKAYQLLIDKNKMTHEDIATYMGKSRPYISNTIRLLQLPDVIRQAIEDGTISAG
HARALLSLSTSKEQELYFHNILDQGLSVRQIEQLVKTKHPQKKRNKHKTIFVKSLEKELSKSLGLPVALSLQKNDSGQLQ
LSFSNQEELNRIINKLL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1127211 FGK99_RS09985 WP_043031676.1 2085374..2086147(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
ATGACAGAAATCCTAATGCACATTCCTATCGAGGATATTGTGGCAAATCCTTATCAACCACGTCTTCAATTTAATCAAAA
AGAGCTTGAGGAGCTGGCACATTCCATTCAGGCTAATGGTTTGATTCAACCAATCATTGTCAGAAAATCTGATGTATTTG
GCTATGAATTAGTCGCTGGAGAACGACGCTTTAAAGCAGCCAAGCTGGCAGGACTTCAAAAGATTCCAGCAATTGTTAAG
GAAATCTCTACTCTTGAGAGCATGCAGCAGGCCATCGTAGAAAACCTACAGCGCTCAAATTTAAATGCTATTGAAGAGGC
TAAGGCCTATCAATTACTTATTGATAAAAATAAGATGACCCATGAGGACATCGCGACATACATGGGAAAATCACGCCCTT
ATATCAGCAACACCATCAGACTGCTGCAATTACCAGACGTTATTAGACAAGCGATTGAGGACGGTACCATTAGCGCCGGC
CATGCAAGAGCTTTATTATCCTTGTCAACATCAAAAGAGCAGGAGCTGTATTTTCACAACATTCTGGATCAAGGCTTAAG
CGTTAGGCAAATCGAACAGCTGGTAAAGACTAAGCATCCCCAAAAAAAAAGAAACAAACATAAAACCATTTTTGTGAAGT
CTTTAGAAAAAGAGCTCTCAAAATCATTAGGATTACCTGTGGCATTGTCTCTCCAAAAAAATGACAGTGGGCAGCTGCAA
CTGTCATTTTCAAACCAAGAAGAATTGAACAGAATTATCAACAAGCTGCTTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

62.109

99.611

0.619


Multiple sequence alignment