Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGK99_RS03110 Genome accession   NZ_LR594033
Coordinates   656364..658166 (+) Length   600 a.a.
NCBI ID   WP_138118990.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 651364..663166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS03090 (NCTC4675_00632) queA 652416..653444 (-) 1029 WP_012678257.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FGK99_RS03095 (NCTC4675_00633) nagB 653713..654417 (+) 705 WP_138118986.1 glucosamine-6-phosphate deaminase -
  FGK99_RS03100 (NCTC4675_00634) - 654589..655305 (+) 717 WP_012515300.1 pseudouridine synthase -
  FGK99_RS03105 (NCTC4675_00635) - 655397..656374 (+) 978 WP_138118988.1 competence protein CoiA -
  FGK99_RS03110 (NCTC4675_00636) pepF 656364..658166 (+) 1803 WP_138118990.1 oligoendopeptidase F Regulator
  FGK99_RS03115 (NCTC4675_00637) - 658366..658923 (+) 558 WP_012678253.1 GNAT family N-acetyltransferase -
  FGK99_RS03120 (NCTC4675_00638) - 658913..659548 (+) 636 WP_138118992.1 HAD-IA family hydrolase -
  FGK99_RS03125 (NCTC4675_00639) - 659595..660233 (+) 639 WP_172954538.1 HAD family hydrolase -
  FGK99_RS03130 (NCTC4675_00640) - 660315..661022 (+) 708 WP_043030615.1 O-methyltransferase -
  FGK99_RS03135 (NCTC4675_00641) prsA 661085..662086 (+) 1002 WP_138118994.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69034.78 Da        Isoelectric Point: 4.5841

>NTDB_id=1127173 FGK99_RS03110 WP_138118990.1 656364..658166(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMDLTQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEIELTHGNFISLMESKDRTVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVLGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLHEVQDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNKLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMGKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1127173 FGK99_RS03110 WP_138118990.1 656364..658166(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
AACAGAGGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGTAGCAGTC
TCTTAGACATCACAGAGCTACAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCGAAGTATCAGGAATATCAGGCTAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTCTC
TTTTTATGAGCCAGAGTTTATGGACTTGACTCAAGAGACCTATCAGGCCTTCTTAGCGGAAAAGCCAGAATTAGCAGTCT
ATGACCATTTCTTTGACAAGCTGTTTAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGAGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCTTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGATTGAGCTAACACATGGTAATTTCATTAGCCTAATGGAATCTAAAGACCGTACAGTGCGTCAGGCGG
CCTATGAGGCGATGTATAGCACCTATGAGCAATTCCAGCATACCTATGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCTATGTCAGCCAACTTTATTCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTACCGCTGCTTCATCGTTACCTGAAGCTGCGTCAAGAGGTGCTTGGCT
TAGATGATCTAAAGATGTACGATGTTTATACTCCTTTATCTGAGACAGACCTTGCTATTGGTTATGATGAGGCCCTAGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTGGGTCAGGATTATTCAGAGCGTGTTCATCGTGCCTTTACGGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAGCGCTCAGGAGCTTATTCTGGTGGTTCTTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAAGACACCCTTGATAACCTCTATACTCTAGTGCATGAGACAGGTCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATCTTCTTAGCTGAGATTGCTTCAACCACTAATGAAAATATCATGACCGAAGC
TTTGTTACATGAGGTGCAAGATGATAAGGAGCGCTTTGCTATTTTGAATCATTACCTAGATGGTTTTCGCGGAACGGTTT
TTCGTCAAACACAGTTTGCTGAGTTTGAGCACGCTATTCATCAGGCAGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAAGCTATATGCTGATTTAAATGAAAAGTATTATGGATTAAAGAAAGAGGACAACCACTTTATCCAGTATGAGTG
GGCTCGCATTCCGCATTTCTATTACAATTATTATGTCTACCAGTATGCAACAGGCTTTGCAGCAGCGAGCTATTTGGCTG
ATAAGATTGTTCATGGCACACAAGAGGATATTGATCATTACTTGACCTACCTCAAGTCTGGAAATTCAGATTACCCACTT
GAAGTGATTGCTAAGGCTGGGGTTGATATGGGTAAGGGTGATTACCTCGAAGCAGCCTTTAAGGTCTTTGAAGAGCGTTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCTCATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72.667

100

0.727

Multiple sequence alignment