Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGK99_RS01195 Genome accession   NZ_LR594033
Coordinates   233741..235102 (+) Length   453 a.a.
NCBI ID   WP_138118718.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 228741..240102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS01180 (NCTC4675_00242) - 230323..232119 (+) 1797 WP_138118714.1 ABC transporter ATP-binding protein -
  FGK99_RS01185 (NCTC4675_00243) - 232281..233048 (+) 768 WP_138118716.1 epoxyqueuosine reductase QueH -
  FGK99_RS01190 (NCTC4675_00244) - 233228..233674 (+) 447 WP_014622233.1 dUTP diphosphatase -
  FGK99_RS01195 (NCTC4675_00245) radA 233741..235102 (+) 1362 WP_138118718.1 DNA repair protein RadA Machinery gene
  FGK99_RS10005 - 235253..235417 (-) 165 WP_154224863.1 hypothetical protein -
  FGK99_RS01200 (NCTC4675_00246) - 235926..236432 (+) 507 WP_111689802.1 beta-class carbonic anhydrase -
  FGK99_RS01205 (NCTC4675_00247) - 236560..237273 (+) 714 WP_138118720.1 TIGR00266 family protein -
  FGK99_RS01210 (NCTC4675_00248) gltX 237873..239318 (+) 1446 WP_138118722.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49302.70 Da        Isoelectric Point: 7.0273

>NTDB_id=1127162 FGK99_RS01195 WP_138118718.1 233741..235102(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSRPIKLRHVNSVSYQRIQTAMSEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGRVLYVSGEESAEQIKLRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDIPSGIEVVGVMTVGEVLKAVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1127162 FGK99_RS01195 WP_138118718.1 233741..235102(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
ATAGCTAAGAAGAAGGCAAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCCTGGTCTTCCTTTGTAGAAGAGACTGAGGTCAAGGACGTCAAAAATGCCCGTATTAGTCTGACTGGTGAAAAGA
GCAGGCCAATCAAGCTAAGGCATGTTAATAGCGTTAGCTACCAGCGTATCCAGACAGCCATGAGTGAGTTTAATCGAGTG
CTAGGCGGCGGTGTTGTGCCGGGAAGTCTTGTTTTGATTGGTGGTGACCCTGGTATTGGTAAGTCAACCCTGCTGCTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAAGGGTTTTATATGTTTCAGGAGAAGAATCCGCAGAGCAGATAAAGCTGCGCA
GCGACCGCTTGGGACAGACCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAAGCTATTCGGGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAAACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGCTCGGT
CAGTCAGGTGAGAGAGGTTACTGCTGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATCGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCCCGCATGCTGGAGCATATGGTTGATACGGTGCTTTATTTTGAAGGGGAAAGA
CACCATACCTTTCGAATCCTGCGAGCTGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGCTTAGTGGAGGTTCTCAACCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGCTCGGCTGTTG
TCGTTACAATGGAGGGCAGTAGGCCAATTTTAGCTGAGGTGCAGGCCTTGGTGACACCGACTGTTTTTGGCAATGCTAGA
CGAACGACAACTGGGCTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTCTTGGAAAAGCGATGTGGGCTGCTGCTACA
AAATCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTGAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCCA
TTGCCTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTCTTAGGAGAGATTGGCTTGACGGGCGAGATTCGG
CGGGTCACTCGTATTGAGCAGCGGATCAATGAGGCTGCAAAGCTTGGCTTTACCAAGCTTTACGCTCCTAAAAGCTCATT
GCAGGGCATTGACATACCAAGTGGGATTGAGGTTGTTGGTGTAATGACAGTAGGAGAGGTCTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(59-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.106

100

0.841
  radA Streptococcus pneumoniae D39

84.106

100

0.841
  radA Streptococcus pneumoniae R6

84.106

100

0.841
  radA Streptococcus pneumoniae TIGR4

84.106

100

0.841
  radA Streptococcus mitis SK321

84.106

100

0.841
  radA Streptococcus mitis NCTC 12261

83.885

100

0.839
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment