Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   FGK95_RS09785 Genome accession   NZ_LR590625
Coordinates   1964512..1966956 (-) Length   814 a.a.
NCBI ID   WP_093999118.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959512..1971956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS09755 (SAMEA5186854_01960) - 1959516..1959986 (+) 471 WP_093999121.1 8-oxo-dGTP diphosphatase -
  FGK95_RS10915 (SAMEA5186854_01961) - 1960329..1960973 (-) 645 WP_232038591.1 hypothetical protein -
  FGK95_RS10920 (SAMEA5186854_01962) - 1960970..1961545 (-) 576 WP_232038592.1 hypothetical protein -
  FGK95_RS09765 (SAMEA5186854_01963) - 1961551..1962066 (-) 516 WP_138114335.1 lanthionine synthetase LanC family protein -
  FGK95_RS10925 (SAMEA5186854_01964) - 1962032..1962127 (-) 96 Protein_1846 Rgg/GadR/MutR family transcriptional regulator -
  FGK95_RS09775 (SAMEA5186854_01965) groL 1962383..1964008 (-) 1626 WP_003045626.1 chaperonin GroEL -
  FGK95_RS09780 (SAMEA5186854_01966) groES 1964044..1964334 (-) 291 WP_093999119.1 co-chaperone GroES -
  FGK95_RS09785 (SAMEA5186854_01967) clpC 1964512..1966956 (-) 2445 WP_093999118.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  FGK95_RS09790 (SAMEA5186854_01968) - 1966956..1967417 (-) 462 WP_093999117.1 CtsR family transcriptional regulator -
  FGK95_RS09795 - 1967616..1967819 (-) 204 WP_003045634.1 cold-shock protein -
  FGK95_RS09800 (SAMEA5186854_01970) - 1968158..1969114 (+) 957 WP_093999116.1 amidohydrolase family protein -
  FGK95_RS09805 (SAMEA5186854_01971) - 1969250..1969678 (+) 429 WP_003045638.1 MarR family winged helix-turn-helix transcriptional regulator -
  FGK95_RS09810 (SAMEA5186854_01972) - 1969692..1971083 (+) 1392 WP_138114337.1 GNAT family N-acetyltransferase -
  FGK95_RS09815 (SAMEA5186854_01973) - 1971181..1971459 (+) 279 WP_093999114.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 814 a.a.        Molecular weight: 90379.06 Da        Isoelectric Point: 6.7392

>NTDB_id=1127129 FGK95_RS09785 WP_093999118.1 1964512..1966956(-) (clpC) [Streptococcus canis strain B700072]
MIMYSLKMQEIFRQAQFQAARFDSHYLETWHILLAMARVDQSLAGLVLSEFDAKVAVEEYEAAAILAIGKSPKDQVSHVD
FKPQSKTLTNVLQFAQAISQITKDPEVGSEHVLFAMLLNPDIMASRLLEMAGYRIKDKGNGEPRLADLRKAIEIHAGYSK
ETIKTIHELRKPKKTKVQGTFSDMMKPPSTTGDLADFTRDLTEMAKQGLLEPVIGRDAEVSRMIQVLSRKTKNNPVLVGD
AGVGKTALAYGLAQRIVNGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIEADGKIILFVDELHTIMGSGS
GIDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPNLEDAYQILLGLKTSYETYHNVSISD
QAVHTAVKMAHRYLTSKNLPDSAIDLLDEASATVQSMVKKSSSEIITPIDQALLDGDIKKVSRLLAKEAKGQTRRPRPVT
EDDIMATLSKLSGIPLEKLSQADSKKYLNLEKELHKRVIGQEDAVSAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVGKT
ELAKALAEVLFDDASALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNMLLQ
VLDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGVKGISHDHQAMEKRILEELKKAYRPEFINRIDEKVVFH
SLTQENMREVVKIMVQPLIASLAEKGITLKFQPMALKYLSEEGYDVEMGARPLRRTLQTQVEDKLSELILAGDLASGHTL
KIGLSHGKLSFNVG

Nucleotide


Download         Length: 2445 bp        

>NTDB_id=1127129 FGK95_RS09785 WP_093999118.1 1964512..1966956(-) (clpC) [Streptococcus canis strain B700072]
ATGATCATGTATTCATTGAAGATGCAAGAAATCTTTAGGCAGGCACAGTTTCAAGCAGCCCGCTTTGACAGCCACTACCT
AGAAACTTGGCATATCTTGTTAGCCATGGCTAGAGTTGACCAGTCCTTAGCAGGTCTAGTGCTAAGTGAATTTGATGCTA
AAGTTGCAGTGGAAGAATACGAAGCTGCCGCTATTTTAGCTATAGGAAAAAGTCCTAAAGATCAGGTGTCACACGTGGAT
TTTAAGCCTCAATCCAAGACCTTGACGAATGTGTTACAGTTTGCGCAGGCTATTAGTCAAATCACTAAAGACCCAGAAGT
CGGCTCTGAACATGTGCTCTTTGCCATGCTACTCAATCCTGATATTATGGCAAGTCGTCTCTTGGAAATGGCTGGGTATC
GCATCAAAGATAAAGGAAATGGGGAACCTCGCTTAGCTGATTTGCGAAAGGCCATTGAGATTCACGCAGGTTATAGCAAA
GAAACCATTAAGACTATCCATGAGTTACGCAAACCAAAGAAAACGAAGGTTCAAGGAACCTTCTCAGATATGATGAAACC
ACCAAGCACGACGGGTGATTTGGCTGACTTCACCAGAGATTTGACCGAGATGGCAAAACAGGGTCTGCTAGAGCCTGTCA
TTGGTCGTGATGCCGAAGTATCTCGCATGATTCAAGTGCTCAGTCGTAAAACCAAAAATAATCCTGTTCTTGTTGGAGAT
GCAGGGGTTGGTAAAACTGCCCTTGCCTATGGTCTTGCCCAACGTATTGTGAATGGAGCCATTCCTTATGAACTGCAAGA
CATGCGCGTCCTCGAATTGGACATGATGAGCGTCGTTGCGGGGACACGTTTTCGTGGTGATTTTGAAGAACGCATGAACC
AGATTATTGATGACATTGAAGCAGATGGCAAGATTATCCTCTTTGTGGATGAATTGCATACCATTATGGGGTCAGGAAGC
GGTATTGATAGCACACTTGATGCTGCTAATATTTTGAAACCAGCCCTATCTCGTGGCACCCTTCACATGGTCGGAGCAAC
AACGCAGGAAGAGTACCAAAAACATATTGAAAAGGACGCCGCTCTTTCTCGCCGCTTTGCCAAAATTTTAATTGAAGAGC
CTAACCTAGAAGACGCCTATCAGATTTTACTAGGTTTGAAGACTTCCTATGAAACCTACCATAATGTGTCAATTTCTGAT
CAGGCAGTGCATACAGCTGTTAAAATGGCGCATCGCTACCTAACTAGTAAAAATCTTCCAGATTCAGCCATCGATTTGTT
GGACGAAGCTAGCGCTACAGTCCAAAGCATGGTTAAAAAATCAAGTTCGGAAATCATCACACCAATAGATCAGGCACTTC
TTGACGGTGATATAAAAAAGGTTTCACGTCTTTTGGCCAAAGAAGCTAAGGGGCAGACGAGAAGGCCAAGGCCAGTAACA
GAAGACGATATTATGGCAACCCTGAGCAAATTATCAGGGATTCCATTGGAAAAACTCAGTCAGGCTGATAGCAAAAAATA
CCTCAATCTTGAAAAAGAATTGCACAAGCGCGTGATTGGACAAGAAGACGCTGTTTCAGCCATTTCTAGAGCAATCCGTC
GTAATCAATCGGGTATTCGCACTGGTAAACGTCCAATTGGTTCTTTCATGTTCCTTGGACCTACTGGTGTTGGGAAGACT
GAATTGGCTAAAGCTTTGGCAGAAGTCCTCTTTGATGACGCGTCAGCCCTTATCCGCTTTGACATGTCAGAGTATATGGA
AAAATTTGCGGCATCTCGCCTTAATGGAGCGCCTCCAGGCTATGTCGGTTACGATGAGGGCGGTGAATTAACAGAGAAGG
TCAGAAACAAGCCTTATTCTGTCCTTCTCTTTGACGAGGTGGAAAAAGCCCACCCTGACATTTTCAACATGCTCTTACAA
GTGCTTGATGACGGTATGTTGACAGATAGCCGTGGGCGTAAGGTGGACTTCTCAAATACCATTATTATCATGACTAGTAA
TCTAGGGGCAACAGCTCTGCGGGATGATAAAACAGTTGGCTTTGGGGTAAAAGGTATCAGCCATGACCACCAAGCCATGG
AAAAACGGATTTTGGAAGAGTTGAAAAAAGCTTATCGACCAGAATTTATCAACCGAATTGATGAAAAGGTTGTCTTCCAT
AGCCTTACCCAAGAGAATATGAGGGAAGTGGTCAAGATTATGGTGCAGCCATTGATTGCTAGTTTAGCAGAAAAAGGCAT
TACCCTCAAATTCCAGCCAATGGCTCTCAAGTACCTTTCAGAGGAAGGCTATGATGTGGAAATGGGTGCTCGTCCATTGC
GCCGTACTTTGCAAACGCAGGTAGAAGACAAACTATCCGAATTGATTCTTGCTGGTGACTTGGCAAGTGGTCACACCCTG
AAAATTGGGCTTTCCCATGGCAAACTCAGCTTTAACGTTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(544-715)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(722-801)

AAA lid domain (AAA_lid_9)

(376-453)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(95-132)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(15-53)

ATPase family associated with various cellular activities (AAA) (AAA)

(236-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

76.015

99.877

0.759
  clpC Streptococcus thermophilus LMD-9

72.426

100

0.726
  clpC Streptococcus thermophilus LMG 18311

72.304

100

0.725
  clpC Streptococcus pneumoniae TIGR4

65.602

100

0.656
  clpC Streptococcus pneumoniae Rx1

65.602

100

0.656
  clpC Streptococcus pneumoniae D39

65.602

100

0.656
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.568

100

0.5
  clpC Bacillus subtilis subsp. subtilis str. 168

43.63

100

0.446

Multiple sequence alignment