Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   FGK95_RS07435 Genome accession   NZ_LR590625
Coordinates   1464920..1465957 (-) Length   345 a.a.
NCBI ID   WP_003044435.1    Uniprot ID   A0AAV3FT85
Organism   Streptococcus canis strain B700072     
Function   processing of CSP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1463468..1464670 1464920..1465957 flank 250


Gene organization within MGE regions


Location: 1463468..1465957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS07430 (SAMEA5186854_01505) - 1463468..1464670 (+) 1203 WP_138114246.1 IS110 family transposase -
  FGK95_RS07435 (SAMEA5186854_01506) sepM 1464920..1465957 (-) 1038 WP_003044435.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37690.50 Da        Isoelectric Point: 9.7859

>NTDB_id=1127117 FGK95_RS07435 WP_003044435.1 1464920..1465957(-) (sepM) [Streptococcus canis strain B700072]
MKIIKKIKWWLVSLFALVALLITLFFPLPYYVEMPGGAYDIRSVLQVNGKEDKGKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAIYQALTLANKPVTLDYKGVYVLDVSKDSTFKGALNLADTVTGVNDK
QFKSSTELVDYVSHLKLGDKVTVQFMSDSQPKSETGRIIKLKNGKNGIGIALTDHTKVRSEDKIAFSTQGVGGPSAGLMF
TLDIYDQIVKEDLRKGRIIAGTGTIGKHGEVGDIGGAGLKVVAAADAGAEIFFVPNNPVDKALKKTHPKAISNYEEAKRA
AKQLKTKMKIVPVTNVQEALAYLRK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1127117 FGK95_RS07435 WP_003044435.1 1464920..1465957(-) (sepM) [Streptococcus canis strain B700072]
ATGAAAATAATTAAAAAAATCAAATGGTGGCTGGTTAGCCTTTTTGCTCTAGTAGCTTTGCTGATTACCCTCTTTTTCCC
TCTACCTTATTACGTTGAAATGCCTGGCGGCGCTTATGATATTCGCTCTGTTTTACAAGTTAATGGAAAAGAAGATAAAG
GGAAGGGATCTTATCAATTTGTAGCCGTTAGCCTTAGCCGCGCCAGTTTGGCACAGTTATTGTATGCTTGGTTAACCCCT
TTTACCGAAATCAGTTCCGTTGAAGACACTACGGGTGGTTACAGTGATGCTGATTATATCCGCATTAACCAATTCTACAT
GGAAACCTCGCAAAATGCAGCGATCTATCAGGCATTAACCTTGGCGAACAAACCCGTTACGTTGGATTACAAAGGGGTTT
ACGTATTAGATGTTAGCAAAGACTCAACCTTCAAAGGTGCCTTGAATTTAGCAGATACTGTCACTGGTGTGAATGACAAG
CAATTTAAGAGTTCGACAGAGCTTGTGGACTATGTTTCTCATTTAAAACTTGGGGATAAAGTAACTGTTCAGTTTATGAG
TGATAGTCAGCCCAAGTCTGAGACAGGCCGTATTATTAAACTTAAAAACGGTAAAAATGGTATTGGGATTGCTCTTACAG
ACCATACTAAAGTTAGGTCAGAGGATAAGATCGCGTTTAGCACGCAAGGTGTTGGTGGTCCCAGTGCTGGTTTGATGTTT
ACCCTTGATATTTATGACCAAATTGTCAAGGAGGATCTTCGTAAAGGTCGTATCATCGCAGGTACAGGAACGATTGGCAA
ACATGGCGAAGTGGGAGATATTGGTGGCGCAGGCCTTAAAGTTGTGGCTGCCGCAGATGCTGGTGCTGAAATATTCTTTG
TTCCTAACAATCCTGTGGACAAGGCCTTAAAAAAAACGCATCCCAAAGCCATCAGCAACTATGAAGAAGCTAAGCGAGCA
GCTAAGCAATTAAAAACTAAAATGAAGATTGTGCCTGTGACCAATGTTCAGGAAGCTTTGGCTTATCTTCGGAAATGA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-304)

PDZ domain (PDZ_2)

(130-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.884

100

0.719

Multiple sequence alignment