Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LG36_RS00210 Genome accession   NZ_CP009472
Coordinates   43175..43930 (+) Length   251 a.a.
NCBI ID   WP_038598348.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38175..48930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS00195 (LG36_0029) - 38862..40037 (+) 1176 WP_038598339.1 pyridoxal phosphate-dependent aminotransferase -
  LG36_RS00200 (LG36_0030) - 40206..41705 (+) 1500 WP_038598342.1 M57 family metalloprotease -
  LG36_RS00205 (LG36_0031) - 41712..42965 (+) 1254 WP_038598345.1 hypothetical protein -
  LG36_RS00210 (LG36_0032) recO 43175..43930 (+) 756 WP_038598348.1 DNA repair protein RecO Machinery gene
  LG36_RS00215 (LG36_0033) - 44044..44925 (+) 882 WP_038598351.1 Rgg/GadR/MutR family transcriptional regulator -
  LG36_RS00220 (LG36_0034) - 45154..46434 (+) 1281 WP_236620795.1 radical SAM/SPASM domain-containing protein -
  LG36_RS00225 (LG36_0035) - 46438..48000 (+) 1563 WP_038598358.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28649.81 Da        Isoelectric Point: 6.1528

>NTDB_id=112696 LG36_RS00210 WP_038598348.1 43175..43930(+) (recO) [Lactococcus lactis strain AI06]
MRDAETHGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPNASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGVSLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=112696 LG36_RS00210 WP_038598348.1 43175..43930(+) (recO) [Lactococcus lactis strain AI06]
ATGCGTGATGCCGAAACTCATGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTAATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGGTTTCATTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGC
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGGTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-72)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

53.659

98.008

0.526

Multiple sequence alignment