Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   LG36_RS00020 Genome accession   NZ_CP009472
Coordinates   6651..10262 (+) Length   1203 a.a.
NCBI ID   WP_038598280.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1651..15262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS00010 (LG36_0002) dnaN 2111..3253 (+) 1143 WP_003130856.1 DNA polymerase III subunit beta -
  LG36_RS00015 (LG36_0003) rexB 3359..6658 (+) 3300 WP_038598277.1 ATP-dependent nuclease subunit B -
  LG36_RS00020 (LG36_0004) rexA 6651..10262 (+) 3612 WP_038598280.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  LG36_RS00025 - 10299..10487 (+) 189 Protein_4 DUF951 domain-containing protein -
  LG36_RS00030 (LG36_0005) - 10509..11066 (-) 558 WP_038598283.1 helix-turn-helix domain-containing protein -
  LG36_RS00035 (LG36_0006) ychF 11348..12463 (+) 1116 WP_015425597.1 redox-regulated ATPase YchF -
  LG36_RS00040 (LG36_0007) - 12575..12898 (+) 324 WP_015425598.1 helix-turn-helix domain-containing protein -
  LG36_RS00045 (LG36_0008) - 13153..13497 (+) 345 WP_012896907.1 hypothetical protein -

Sequence

Protein


Download         Length: 1203 a.a.        Molecular weight: 138810.92 Da        Isoelectric Point: 4.9700

>NTDB_id=112695 LG36_RS00020 WP_038598280.1 6651..10262(+) (rexA) [Lactococcus lactis strain AI06]
MSEVKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRLERDLKKARQES
SDENQARRLTLALQNLSNADIGTMDSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSEDDGLNISK
EKFEELIKNFSKDRNIAGFKKVVYTTYRFASATENPIKWLENQFLKGFETYKSLTDLSADFSADIKENLLIFFELLETSL
TNGVIAKKGAGRDKANLILDNKNELLEAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPG
EIRKFVDKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEENPDIRETLKEHYDEI
MIDEYQDTSHTQERMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFRSRGEVLTFTN
DIFKHLMDEKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETDESEVRISDGEIKGAAQEIKKIIEAG
VEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDEL
TRISTQGSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKIYTETYYFDYVGALKN
GEMRQANLQALAVRAETYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRF
NDRDLKEDVILSRENGLGMKLIADLKDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLV
GKIKETDKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPMKLNVYTKEELEAEKLEFTSQPDFKKLVEE
SEKFDNIMAYSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKRSYEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKITA
AEIGSATHSFMQYADFSQADLFSFQATLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFA
KEQYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQVDKYLILLGGPQQVFVEK
LDD

Nucleotide


Download         Length: 3612 bp        

>NTDB_id=112695 LG36_RS00020 WP_038598280.1 6651..10262(+) (rexA) [Lactococcus lactis strain AI06]
ATGAGTGAAGTAAAATTAACTCCAGAGCAAAATGAAGCCATTCATAGTTCTGGTAAGAATATTCTAGTTTCAGCGAGTGC
TGGTTCCGGAAAAACTTTTGTTATGGCTCAAAGAATTGTCGAGAAAGTCAAACAAGGAATTGAAATTGATCGACTTTTCA
TTTCCACATTTACAAAAAAAGCAGCAAGCGAATTACGGATGCGGCTTGAGCGAGATTTAAAAAAGGCCAGACAAGAAAGT
TCTGATGAAAATCAAGCTCGTAGGTTGACACTTGCTTTACAGAACCTGTCAAATGCTGATATTGGAACTATGGATAGTTT
CACCCAAAAATTGACAAAAACGAATTTCAATCGAGTAAATATTGACCCGAATTTCCGAATTTTAGCTGATCAAACAGAGA
GTGATTTAATTAGACAAGAAGTCTTTGAACAATTGGTTGAGTCTTATCTATCAGAAGATGATGGATTGAATATTTCAAAA
GAAAAATTTGAAGAACTTATAAAAAATTTTTCTAAAGACAGAAATATTGCTGGTTTCAAAAAGGTAGTTTACACTACTTA
CCGTTTTGCATCAGCAACCGAAAATCCAATAAAGTGGTTAGAAAATCAATTTTTAAAAGGTTTTGAAACATATAAATCAC
TGACAGACTTGTCAGCAGATTTTTCAGCAGATATAAAAGAGAATTTACTGATATTTTTTGAACTTCTAGAAACTTCATTA
ACCAATGGAGTAATTGCTAAAAAAGGAGCTGGACGTGATAAGGCCAATCTTATTTTAGATAATAAAAATGAACTCTTAGA
AGCAATAACCACTAAAGATTTTGCAACTTTCACAGAACTATTTTTATCAATAGATACAGATATTCGGGTGGGTTCTTCAA
AAGATGAAATACTTTCGGCTCTGAAAAAAGATTTTTCAGCACAAAAGCAAGACTTAGTCGGTTCGAAATCCAAACCTGGA
GAAATTCGGAAGTTTGTTGATAAAATAAAACATGGTCAGTTGATTGAAAAATATCAAAATCAAGCATTTGAAATCGCAGA
AAACTTACAAAAATTTGTTATTGAGTTTTACCAAAGTTATTTAGAACGTAAAAAGAATGAAAATGCCTTTGAGTACTCTG
ATATCGCACACTTTGCCATCGAAATTTTAGAGGAAAATCCAGATATACGTGAAACTTTAAAAGAACATTATGATGAAATC
ATGATTGATGAGTATCAGGATACCAGCCACACTCAGGAGCGAATGCTGGAACTTTTATCAAATGGACATAATCTCTTCAT
GGTTGGTGATATTAAGCAATCAATTTACGGCTTTCGTTTAGCTGATCCTGGCCTCTTTTTAGAAAAATATAAAGACTATG
CCAAGACAGAAAATCCAAATCAATTAATTCGCTTAAAAGAAAACTTTCGTTCACGTGGTGAGGTTTTAACATTTACAAAT
GATATCTTTAAACACCTGATGGATGAAAAATTAGGTGAGATGACTTATGGCAAAGAAGAAGCCTTAGTTCAAGGAAATAT
TACTGATTATCCAGTTGAATCTGAGAAAGATTTTTATCCAGAACTTCTTTTATACAAAGAAAATACAAGTGATGAAGAAA
CAGATGAATCCGAAGTAAGAATTTCGGATGGAGAGATTAAAGGAGCAGCTCAAGAAATAAAAAAAATTATTGAAGCTGGA
GTTGAACCAAAAGATATAGCAATCTTGGTTCGATCTAAATCAAATAATAATAAAATTGAGGATATTCTGCTTAGTTACGA
TATTCCAGTGGTTCTTGATGAAGGACGAGTTGATTTTTTGAAATCAATGGAAGTCTTAATTATGTTAGATGTTTTACGAG
CAATTGATAATCCACTCTATGATTTATCATTGGTTGCGATGTTAAGGTCTCCGTTATTTGGATTTAATGAAGATGAATTA
ACGAGAATCAGTACTCAAGGAAGCCATGACCTTCGATTTTGGGATAAAATTCTTTTGTCACTTAATAAAGAAGGACAAAA
TCCAGAACTTATCAATCCTTCCTTAGAGAACAAGCTTAAAGCATTTTATAAGAAGTTTACAGAATGGCGTAAACTTGTAA
ACCAAGTTGCAATTCATGATTTACTTTGGAAAATATATACAGAAACCTACTATTTTGACTATGTTGGCGCCTTAAAAAAT
GGGGAAATGCGTCAAGCGAACTTACAAGCCTTAGCGGTTCGAGCAGAAACATATGAAAGTTCTGGTTATAAAGGATTATT
TAAATTTGTAAGATTAATCAACAAATTTATGGAACAAAATAATGATTTAGCTTCTGTTAATATAAAACTTCCTCAAAATG
CTGTTCGAGTAATGACCTTCCATAAATCAAAAGGATTAGAATTTGATTATGTCTTTTTAATGAATTTACAATCTCGTTTC
AACGATCGTGATTTGAAAGAAGATGTTATCCTAAGTCGTGAAAATGGTTTAGGAATGAAGCTTATTGCTGATTTAAAGGA
TGAAGCAGATGTTATCACTGATTTCCCTTATGCTTTAGTGAAAATGGAAACATTCCCTTATATGGTGAATAAAGACTTAA
AACAAAGAGCAGCTCTCTCAGAAGAAATGCGTGTTTTATATGTTGCATTTACACGAGCAAAGAAAAAACTTTATCTTGTC
GGAAAAATAAAAGAAACAGATAAGAAATCAGGACTTGACCTTTATGATAATGCAAGTTTAGAAGGAAAGATTTTAGAAGA
TAAATTTCGTAATTCAAGTCGTGGTTTTCAACACTGGATATTGGCGCTTCAAAATGCCACAAAACTTCCGATGAAACTCA
ATGTCTACACAAAAGAAGAGTTGGAAGCAGAAAAACTTGAATTTACAAGTCAACCTGATTTCAAAAAATTGGTCGAAGAA
TCAGAAAAATTTGATAATATCATGGCTTATTCTGATGAAATACAAAAAGCTCAAAAAATTATGAATTATGAATATCCACA
TCAAGCAGCAACAGAGCTTTCAAGTATTCAAACACCAAGTCAGGTTAAAAAACGAAGCTACGAGAAACAATTACAAGTGG
GTGAAATTCAACCGAAAAGTGAATTTACTCGGGTTAAAAAACTAGATTTTTCTGATTTTGGTCCTAAGAAAATTACTGCT
GCAGAAATCGGTTCGGCAACACATAGTTTTATGCAGTATGCAGATTTTTCTCAAGCAGATTTATTTAGTTTTCAAGCGAC
ACTTGATGAAATGGGATTTGATGAAAAAATAAAAAATCAAATTGATATTGCTAAAATTTTGACTTTGTTCGATACAGATT
TCGGTCAGTTTTTATCAGAAAATGTTGATAAAACAGTTAAAGAAGCACCATTTTCAATGTTGAGAACAGATGAATTTGCT
AAAGAGCAGTATATTGTTCGGGGAATTTGTGATGGATTTGTTAAACTTACTGATAAAATCGTTCTATTTGATTATAAGAC
AGATAGATTTACAAGTTCTTCAGCTATTTCTGAAATAAAAGAGCGTTATAGAGATCAGATGAATCTTTATAGCGAGGCTT
TGAAAAAAGCCTACGATGTCAACCAAGTTGACAAGTATCTCATTTTATTAGGAGGCCCTCAGCAAGTTTTTGTTGAAAAA
CTAGATGATTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-879)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(6-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

41.181

100

0.417

Multiple sequence alignment